{"id":"https://openalex.org/W2281302412","doi":"https://doi.org/10.1007/978-3-642-24669-2_35","title":"Reconfigurable Hardware Computing for Accelerating Protein Folding Simulations Using the Harmony Search Algorithm and the 3D-HP-Side Chain Model","display_name":"Reconfigurable Hardware Computing for Accelerating Protein Folding Simulations Using the Harmony Search Algorithm and the 3D-HP-Side Chain Model","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2281302412","doi":"https://doi.org/10.1007/978-3-642-24669-2_35","mag":"2281302412"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-24669-2_35","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-24669-2_35","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028825007","display_name":"C\u00e9sar Manuel Vargas Ben\u00edtez","orcid":"https://orcid.org/0000-0002-5691-5432"},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"C\u00e9sar Manuel Vargas Ben\u00edtez","raw_affiliation_strings":["Bioinformatics Laboratory, Federal University of Technology - Paran\u00e1, Av. 7 de setembro, 3165, 80230-901, Curitiba, PR, Brazil"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Laboratory, Federal University of Technology - Paran\u00e1, Av. 7 de setembro, 3165, 80230-901, Curitiba, PR, Brazil","institution_ids":["https://openalex.org/I1283613182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006426655","display_name":"Marlon H. Scalabrin","orcid":"https://orcid.org/0000-0002-2134-8546"},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Marlon Scalabrin","raw_affiliation_strings":["Bioinformatics Laboratory, Federal University of Technology - Paran\u00e1, Av. 7 de setembro, 3165, 80230-901, Curitiba, PR, Brazil"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Laboratory, Federal University of Technology - Paran\u00e1, Av. 7 de setembro, 3165, 80230-901, Curitiba, PR, Brazil","institution_ids":["https://openalex.org/I1283613182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019757557","display_name":"Heitor Silv\u00e9rio Lopes","orcid":"https://orcid.org/0000-0003-3984-1432"},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Heitor Silv\u00e9rio Lopes","raw_affiliation_strings":["Bioinformatics Laboratory, Federal University of Technology - Paran\u00e1, Av. 7 de setembro, 3165, 80230-901, Curitiba, PR, Brazil"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Laboratory, Federal University of Technology - Paran\u00e1, Av. 7 de setembro, 3165, 80230-901, Curitiba, PR, Brazil","institution_ids":["https://openalex.org/I1283613182"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018546513","display_name":"Carlos R. Erig Lima","orcid":"https://orcid.org/0000-0002-4026-4444"},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Carlos R. Erig Lima","raw_affiliation_strings":["Bioinformatics Laboratory, Federal University of Technology - Paran\u00e1, Av. 7 de setembro, 3165, 80230-901, Curitiba, PR, Brazil"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Laboratory, Federal University of Technology - Paran\u00e1, Av. 7 de setembro, 3165, 80230-901, Curitiba, PR, Brazil","institution_ids":["https://openalex.org/I1283613182"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5028825007"],"corresponding_institution_ids":["https://openalex.org/I1283613182"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.0596,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.79163987,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"363","last_page":"374"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9800000190734863,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.97079998254776,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7122321724891663},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.5749632716178894},{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.5434780716896057},{"id":"https://openalex.org/keywords/ribosome","display_name":"Ribosome","score":0.5247043371200562},{"id":"https://openalex.org/keywords/protein-biosynthesis","display_name":"Protein biosynthesis","score":0.487403929233551},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.46699705719947815},{"id":"https://openalex.org/keywords/polypeptide-chain","display_name":"Polypeptide chain","score":0.4576503336429596},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4142796993255615},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.39456382393836975},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35433313250541687},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2801099419593811},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.15946805477142334},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15642014145851135},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09272503852844238},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08680164813995361}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7122321724891663},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.5749632716178894},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.5434780716896057},{"id":"https://openalex.org/C88478588","wikidata":"https://www.wikidata.org/wiki/Q42244","display_name":"Ribosome","level":4,"score":0.5247043371200562},{"id":"https://openalex.org/C3675279","wikidata":"https://www.wikidata.org/wiki/Q211935","display_name":"Protein biosynthesis","level":2,"score":0.487403929233551},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.46699705719947815},{"id":"https://openalex.org/C2993989360","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Polypeptide chain","level":3,"score":0.4576503336429596},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4142796993255615},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.39456382393836975},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35433313250541687},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2801099419593811},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.15946805477142334},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15642014145851135},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09272503852844238},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08680164813995361},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-24669-2_35","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-24669-2_35","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1534705718","https://openalex.org/W1544672259","https://openalex.org/W1968225289","https://openalex.org/W1991782483","https://openalex.org/W1993885071","https://openalex.org/W2029598302","https://openalex.org/W2032970412","https://openalex.org/W2045777307","https://openalex.org/W2060595294","https://openalex.org/W2114899912","https://openalex.org/W2140886937","https://openalex.org/W2146421955","https://openalex.org/W2150264536","https://openalex.org/W2478392834","https://openalex.org/W2500153114","https://openalex.org/W2611927968","https://openalex.org/W3102296560"],"related_works":["https://openalex.org/W2021902173","https://openalex.org/W2095759257","https://openalex.org/W2030374460","https://openalex.org/W2416435078","https://openalex.org/W2164214501","https://openalex.org/W1634314480","https://openalex.org/W1985933912","https://openalex.org/W3108292571","https://openalex.org/W1991037498","https://openalex.org/W2260493136"],"abstract_inverted_index":null,"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}