{"id":"https://openalex.org/W2138831039","doi":"https://doi.org/10.1007/978-3-642-24583-1_41","title":"Reference Sequence Construction for Relative Compression of Genomes","display_name":"Reference Sequence Construction for Relative Compression of Genomes","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2138831039","doi":"https://doi.org/10.1007/978-3-642-24583-1_41","mag":"2138831039"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-24583-1_41","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-24583-1_41","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024551016","display_name":"Shanika Kuruppu","orcid":null},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Shanika Kuruppu","raw_affiliation_strings":["National ICT Australia Department of Computer Science & Software Engineering, University of Melbourne, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National ICT Australia Department of Computer Science & Software Engineering, University of Melbourne, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I42894916"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021097696","display_name":"Simon J. Puglisi","orcid":"https://orcid.org/0000-0001-7668-7636"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Simon J. Puglisi","raw_affiliation_strings":["Department of Informatics, King\u2019s College London, United Kingdom","Department of Informatics, King's College London, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, King\u2019s College London, United Kingdom","institution_ids":["https://openalex.org/I183935753"]},{"raw_affiliation_string":"Department of Informatics, King's College London, United Kingdom","institution_ids":["https://openalex.org/I183935753"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041495909","display_name":"Justin Zobel","orcid":"https://orcid.org/0000-0001-6622-032X"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Justin Zobel","raw_affiliation_strings":["National ICT Australia Department of Computer Science & Software Engineering, University of Melbourne, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National ICT Australia Department of Computer Science & Software Engineering, University of Melbourne, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I42894916"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":3.7985,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.94606245,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"420","last_page":"425"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7811733484268188},{"id":"https://openalex.org/keywords/compression","display_name":"Compression (physics)","score":0.6913366317749023},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.6737897396087646},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.6145492196083069},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6026614308357239},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.5584027171134949},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5402066707611084},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.485953688621521},{"id":"https://openalex.org/keywords/k-mer","display_name":"k-mer","score":0.41362959146499634},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.2507821321487427},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.23834776878356934},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1668556034564972},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.06931328773498535},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06905406713485718},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.05963793396949768}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7811733484268188},{"id":"https://openalex.org/C180016635","wikidata":"https://www.wikidata.org/wiki/Q2712821","display_name":"Compression (physics)","level":2,"score":0.6913366317749023},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.6737897396087646},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.6145492196083069},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6026614308357239},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.5584027171134949},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5402066707611084},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.485953688621521},{"id":"https://openalex.org/C2279292","wikidata":"https://www.wikidata.org/wiki/Q6322851","display_name":"k-mer","level":4,"score":0.41362959146499634},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.2507821321487427},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.23834776878356934},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1668556034564972},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.06931328773498535},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06905406713485718},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.05963793396949768},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-24583-1_41","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-24583-1_41","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.754.598","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.754.598","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arxiv.org/pdf/1106.3791.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W153132339","https://openalex.org/W1499602918","https://openalex.org/W1528475610","https://openalex.org/W1528514765","https://openalex.org/W1603190194","https://openalex.org/W1970231722","https://openalex.org/W1971849009","https://openalex.org/W1976149088","https://openalex.org/W1993744084","https://openalex.org/W2072021854","https://openalex.org/W2096258819","https://openalex.org/W2107745473","https://openalex.org/W2108278098","https://openalex.org/W2110553099","https://openalex.org/W2112509895","https://openalex.org/W2127912200","https://openalex.org/W2137661542","https://openalex.org/W2144514096","https://openalex.org/W2146028503","https://openalex.org/W2147492358","https://openalex.org/W4238014149"],"related_works":["https://openalex.org/W2040004304","https://openalex.org/W2612632602","https://openalex.org/W2321805087","https://openalex.org/W2903489885","https://openalex.org/W2887611835","https://openalex.org/W2020101499","https://openalex.org/W4298439973","https://openalex.org/W2418055506","https://openalex.org/W1940643615","https://openalex.org/W2767590279"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":4}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
