{"id":"https://openalex.org/W2275615274","doi":"https://doi.org/10.1007/978-3-642-21260-4_26","title":"In Silico Evolution of Multi-scale Microbial Systems in the Presence of Mobile Genetic Elements and Horizontal Gene Transfer","display_name":"In Silico Evolution of Multi-scale Microbial Systems in the Presence of Mobile Genetic Elements and Horizontal Gene Transfer","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2275615274","doi":"https://doi.org/10.1007/978-3-642-21260-4_26","mag":"2275615274"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-21260-4_26","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-21260-4_26","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064103619","display_name":"Vadim Mozhayskiy","orcid":null},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vadim Mozhayskiy","raw_affiliation_strings":["Department of Computer Science and Genome Center, University of California Davis, One Shields Avenue, Davis, CA, 95616, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Genome Center, University of California Davis, One Shields Avenue, Davis, CA, 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004351739","display_name":"Ilias Tagkopoulos","orcid":"https://orcid.org/0000-0003-1104-7616"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ilias Tagkopoulos","raw_affiliation_strings":["Department of Computer Science and Genome Center, University of California Davis, One Shields Avenue, Davis, CA, 95616, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Genome Center, University of California Davis, One Shields Avenue, Davis, CA, 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5004351739"],"corresponding_institution_ids":["https://openalex.org/I84218800"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":11.8756,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.98311008,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"262","last_page":"273"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/horizontal-gene-transfer","display_name":"Horizontal gene transfer","score":0.7855075597763062},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7320957183837891},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6970162987709045},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.6033611297607422},{"id":"https://openalex.org/keywords/mobile-genetic-elements","display_name":"Mobile genetic elements","score":0.48205694556236267},{"id":"https://openalex.org/keywords/gene-transfer","display_name":"Gene transfer","score":0.43714478611946106},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.25052762031555176},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17039069533348083},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14254233241081238},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.07308465242385864},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.05937287211418152},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.059366583824157715}],"concepts":[{"id":"https://openalex.org/C92938381","wikidata":"https://www.wikidata.org/wiki/Q83185","display_name":"Horizontal gene transfer","level":4,"score":0.7855075597763062},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7320957183837891},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6970162987709045},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.6033611297607422},{"id":"https://openalex.org/C132533263","wikidata":"https://www.wikidata.org/wiki/Q2347362","display_name":"Mobile genetic elements","level":4,"score":0.48205694556236267},{"id":"https://openalex.org/C3018928802","wikidata":"https://www.wikidata.org/wiki/Q83185","display_name":"Gene transfer","level":3,"score":0.43714478611946106},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.25052762031555176},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17039069533348083},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14254233241081238},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.07308465242385864},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.05937287211418152},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.059366583824157715},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-21260-4_26","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-21260-4_26","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.710.3072","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.710.3072","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://tagkopouloslab.ucdavis.edu/papers/2011_ISBRA.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4300000071525574,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1578556740","https://openalex.org/W1963732026","https://openalex.org/W2006716355","https://openalex.org/W2020048892","https://openalex.org/W2044775606","https://openalex.org/W2045815467","https://openalex.org/W2053822186","https://openalex.org/W2056772522","https://openalex.org/W2062210712","https://openalex.org/W2084134149","https://openalex.org/W2088297366","https://openalex.org/W2108923274","https://openalex.org/W2110105435","https://openalex.org/W2121166240","https://openalex.org/W2124788609","https://openalex.org/W2137296148","https://openalex.org/W2138728248","https://openalex.org/W2142879643","https://openalex.org/W2153685804","https://openalex.org/W2164321064","https://openalex.org/W2165479490","https://openalex.org/W2166074460","https://openalex.org/W2174626282","https://openalex.org/W3017143921","https://openalex.org/W3098632781","https://openalex.org/W4239648059","https://openalex.org/W4256068768","https://openalex.org/W4295837538"],"related_works":["https://openalex.org/W1989898630","https://openalex.org/W2945663299","https://openalex.org/W4390909895","https://openalex.org/W1891155455","https://openalex.org/W2520150954","https://openalex.org/W2959951739","https://openalex.org/W2983142016","https://openalex.org/W4386641919","https://openalex.org/W4402076385","https://openalex.org/W3191036774"],"abstract_inverted_index":null,"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
