{"id":"https://openalex.org/W1972254009","doi":"https://doi.org/10.1007/978-3-642-20036-6_40","title":"Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences","display_name":"Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W1972254009","doi":"https://doi.org/10.1007/978-3-642-20036-6_40","mag":"1972254009"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-20036-6_40","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-20036-6_40","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007542519","display_name":"Song Gao","orcid":"https://orcid.org/0000-0001-7427-6681"},"institutions":[{"id":"https://openalex.org/I4210126319","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596","https://openalex.org/I170897317","https://openalex.org/I4210126319"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Song Gao","raw_affiliation_strings":["NUS Graduate School for Integrative Sciences and Engineering, Centre for Life Sciences, 28 Medical Drive, Singapore","NUS Graduate School for Integrative Sciences and Engineering, Singapore#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NUS Graduate School for Integrative Sciences and Engineering, Centre for Life Sciences, 28 Medical Drive, Singapore","institution_ids":[]},{"raw_affiliation_string":"NUS Graduate School for Integrative Sciences and Engineering, Singapore#TAB#","institution_ids":["https://openalex.org/I4210126319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062774997","display_name":"Niranjan Nagarajan","orcid":"https://orcid.org/0000-0003-0850-5604"},"institutions":[{"id":"https://openalex.org/I66068411","display_name":"Genome Institute of Singapore","ror":"https://ror.org/05k8wg936","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I66068411"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Niranjan Nagarajan","raw_affiliation_strings":["Computational and Systems Biology, Genome Institute of Singapore, 60 Biopolis Street, Singapore","Computational and Systems Biology, Genome Institute of Singapore, Singapore;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and Systems Biology, Genome Institute of Singapore, 60 Biopolis Street, Singapore","institution_ids":["https://openalex.org/I66068411"]},{"raw_affiliation_string":"Computational and Systems Biology, Genome Institute of Singapore, Singapore;","institution_ids":["https://openalex.org/I66068411"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012563463","display_name":"Wing\u2010Kin Sung","orcid":"https://orcid.org/0000-0001-7806-7086"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I66068411","display_name":"Genome Institute of Singapore","ror":"https://ror.org/05k8wg936","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I66068411"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Wing-Kin Sung","raw_affiliation_strings":["Computational and Systems Biology, Genome Institute of Singapore, 60 Biopolis Street, Singapore","School of Computing, National University of Singapore, 21 Lower Kent Ridge Road, Singapore","Computational and Systems Biology, Genome Institute of Singapore, Singapore and School of Computing, National University of Singapore, Singapore#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and Systems Biology, Genome Institute of Singapore, 60 Biopolis Street, Singapore","institution_ids":["https://openalex.org/I66068411"]},{"raw_affiliation_string":"School of Computing, National University of Singapore, 21 Lower Kent Ridge Road, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"Computational and Systems Biology, Genome Institute of Singapore, Singapore and School of Computing, National University of Singapore, Singapore#TAB#","institution_ids":["https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.6533,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.89866816,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"437","last_page":"451"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.97079998254776,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.7711160182952881},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7421807050704956},{"id":"https://openalex.org/keywords/scaffold","display_name":"Scaffold","score":0.6462337374687195},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.4745429456233978},{"id":"https://openalex.org/keywords/scheduling","display_name":"Scheduling (production processes)","score":0.4716443419456482},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4411347508430481},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.43008750677108765},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4113958179950714},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3360905647277832},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.3274194002151489},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.1923351287841797},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14937230944633484},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13205936551094055},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.07693412899971008},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0694836974143982}],"concepts":[{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.7711160182952881},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7421807050704956},{"id":"https://openalex.org/C89429830","wikidata":"https://www.wikidata.org/wiki/Q735710","display_name":"Scaffold","level":2,"score":0.6462337374687195},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.4745429456233978},{"id":"https://openalex.org/C206729178","wikidata":"https://www.wikidata.org/wiki/Q2271896","display_name":"Scheduling (production processes)","level":2,"score":0.4716443419456482},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4411347508430481},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.43008750677108765},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4113958179950714},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3360905647277832},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.3274194002151489},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1923351287841797},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14937230944633484},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13205936551094055},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.07693412899971008},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0694836974143982},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-20036-6_40","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-20036-6_40","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/42138","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/42138","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Conference Paper"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1510244790","https://openalex.org/W1527507758","https://openalex.org/W1635391495","https://openalex.org/W1841715584","https://openalex.org/W1968812653","https://openalex.org/W1970995855","https://openalex.org/W1982827785","https://openalex.org/W1992950355","https://openalex.org/W2039451540","https://openalex.org/W2041930701","https://openalex.org/W2048818637","https://openalex.org/W2083215220","https://openalex.org/W2097529842","https://openalex.org/W2099570444","https://openalex.org/W2107282968","https://openalex.org/W2121911035","https://openalex.org/W2129873761","https://openalex.org/W2131852975","https://openalex.org/W2132012257","https://openalex.org/W2132341951","https://openalex.org/W2145186656","https://openalex.org/W2152465654","https://openalex.org/W2152831346","https://openalex.org/W2159307101","https://openalex.org/W2161668137","https://openalex.org/W2170525352","https://openalex.org/W2171531867"],"related_works":["https://openalex.org/W2015535546","https://openalex.org/W1994449010","https://openalex.org/W2074936491","https://openalex.org/W1545755951","https://openalex.org/W2069489638","https://openalex.org/W2044103084","https://openalex.org/W2162517701","https://openalex.org/W140544075","https://openalex.org/W4242258765","https://openalex.org/W2360829643"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
