{"id":"https://openalex.org/W1513346358","doi":"https://doi.org/10.1007/978-3-642-19748-2_2","title":"Translation from the Quantified Implicit Process Flow Abstraction in SBGN-PD Diagrams to Bio-PEPA Illustrated on the Cholesterol Pathway","display_name":"Translation from the Quantified Implicit Process Flow Abstraction in SBGN-PD Diagrams to Bio-PEPA Illustrated on the Cholesterol Pathway","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W1513346358","doi":"https://doi.org/10.1007/978-3-642-19748-2_2","mag":"1513346358"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-19748-2_2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-19748-2_2","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070235523","display_name":"Laurence Loewe","orcid":"https://orcid.org/0000-0002-6253-9269"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Laurence Loewe","raw_affiliation_strings":["Centre for System Biology at Edinburgh, King\u2019s Buildings, The University of Edinburgh, Edinburgh, EH9 3JD, Scotland","Centre for System Biology at Edinburgh, King's Buildings, The University of Edinburgh, Edinburgh, EH9 3JD, Scotland"],"affiliations":[{"raw_affiliation_string":"Centre for System Biology at Edinburgh, King\u2019s Buildings, The University of Edinburgh, Edinburgh, EH9 3JD, Scotland","institution_ids":["https://openalex.org/I98677209"]},{"raw_affiliation_string":"Centre for System Biology at Edinburgh, King's Buildings, The University of Edinburgh, Edinburgh, EH9 3JD, Scotland","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110310298","display_name":"Maria Luisa Guerriero","orcid":null},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Maria Luisa Guerriero","raw_affiliation_strings":["Centre for System Biology at Edinburgh, King\u2019s Buildings, The University of Edinburgh, Edinburgh, EH9 3JD, Scotland","Centre for System Biology at Edinburgh, King's Buildings, The University of Edinburgh, Edinburgh, EH9 3JD, Scotland"],"affiliations":[{"raw_affiliation_string":"Centre for System Biology at Edinburgh, King\u2019s Buildings, The University of Edinburgh, Edinburgh, EH9 3JD, Scotland","institution_ids":["https://openalex.org/I98677209"]},{"raw_affiliation_string":"Centre for System Biology at Edinburgh, King's Buildings, The University of Edinburgh, Edinburgh, EH9 3JD, Scotland","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054484953","display_name":"Steven Watterson","orcid":"https://orcid.org/0000-0002-2750-6410"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Steven Watterson","raw_affiliation_strings":["Centre for System Biology at Edinburgh, King\u2019s Buildings, The University of Edinburgh, Edinburgh, EH9 3JD, Scotland","Division of Pathway Medicine, The University of Edinburgh, UK","Centre for System Biology at Edinburgh, King's Buildings, The University of Edinburgh, Edinburgh, EH9 3JD, Scotland"],"affiliations":[{"raw_affiliation_string":"Centre for System Biology at Edinburgh, King\u2019s Buildings, The University of Edinburgh, Edinburgh, EH9 3JD, Scotland","institution_ids":["https://openalex.org/I98677209"]},{"raw_affiliation_string":"Division of Pathway Medicine, The University of Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]},{"raw_affiliation_string":"Centre for System Biology at Edinburgh, King's Buildings, The University of Edinburgh, Edinburgh, EH9 3JD, Scotland","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053863175","display_name":"Stuart Moodie","orcid":"https://orcid.org/0000-0001-6191-5595"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stuart Moodie","raw_affiliation_strings":["School of Informatics, The University of Edinburgh, UK"],"affiliations":[{"raw_affiliation_string":"School of Informatics, The University of Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065696246","display_name":"Peter Ghazal","orcid":"https://orcid.org/0000-0003-0035-2228"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Peter Ghazal","raw_affiliation_strings":["Centre for System Biology at Edinburgh, King\u2019s Buildings, The University of Edinburgh, Edinburgh, EH9 3JD, Scotland","Division of Pathway Medicine, The University of Edinburgh, UK","Centre for System Biology at Edinburgh, King\u2019s Buildings, The University of Edinburgh, Edinburgh, Scotland"],"affiliations":[{"raw_affiliation_string":"Centre for System Biology at Edinburgh, King\u2019s Buildings, The University of Edinburgh, Edinburgh, EH9 3JD, Scotland","institution_ids":["https://openalex.org/I98677209"]},{"raw_affiliation_string":"Division of Pathway Medicine, The University of Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]},{"raw_affiliation_string":"Centre for System Biology at Edinburgh, King\u2019s Buildings, The University of Edinburgh, Edinburgh, Scotland","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035860397","display_name":"Jane Hillston","orcid":"https://orcid.org/0000-0003-4914-9255"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jane Hillston","raw_affiliation_strings":["Centre for System Biology at Edinburgh, King\u2019s Buildings, The University of Edinburgh, Edinburgh, EH9 3JD, Scotland","School of Informatics, The University of Edinburgh, UK","Centre for System Biology at Edinburgh, King's Buildings, The University of Edinburgh, Edinburgh, EH9 3JD, Scotland"],"affiliations":[{"raw_affiliation_string":"Centre for System Biology at Edinburgh, King\u2019s Buildings, The University of Edinburgh, Edinburgh, EH9 3JD, Scotland","institution_ids":["https://openalex.org/I98677209"]},{"raw_affiliation_string":"School of Informatics, The University of Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]},{"raw_affiliation_string":"Centre for System Biology at Edinburgh, King's Buildings, The University of Edinburgh, Edinburgh, EH9 3JD, Scotland","institution_ids":["https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5070235523"],"corresponding_institution_ids":["https://openalex.org/I98677209"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.5894,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.83143087,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"13","last_page":"38"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.984499990940094,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/abstraction","display_name":"Abstraction","score":0.7208355665206909},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6375137567520142},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.5999146103858948},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.5683180093765259},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.44139695167541504},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2645537257194519},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.08843901753425598},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.07476961612701416}],"concepts":[{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.7208355665206909},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6375137567520142},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.5999146103858948},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.5683180093765259},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.44139695167541504},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2645537257194519},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.08843901753425598},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.07476961612701416},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-19748-2_2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-19748-2_2","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:https://orca.cardiff.ac.uk:113101","is_oa":false,"landing_page_url":"https://orca.cardiff.ac.uk/id/eprint/113101/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401195","display_name":"ORCA Online Research @Cardiff (Cardiff University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79510175","host_organization_name":"Cardiff University","host_organization_lineage":["https://openalex.org/I79510175"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Book Section"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.6100000143051147,"display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G2160003213","display_name":null,"funder_award_id":"BB/D019621/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W791148253","https://openalex.org/W1495660511","https://openalex.org/W1513962738","https://openalex.org/W1544529442","https://openalex.org/W1602280388","https://openalex.org/W1606860353","https://openalex.org/W1667182944","https://openalex.org/W1891842933","https://openalex.org/W1968149345","https://openalex.org/W1976522393","https://openalex.org/W1983350265","https://openalex.org/W1986649132","https://openalex.org/W2021089599","https://openalex.org/W2034463423","https://openalex.org/W2038264484","https://openalex.org/W2045478141","https://openalex.org/W2065219357","https://openalex.org/W2069157810","https://openalex.org/W2069941324","https://openalex.org/W2071124826","https://openalex.org/W2078734278","https://openalex.org/W2101506009","https://openalex.org/W2103970715","https://openalex.org/W2104689123","https://openalex.org/W2105946516","https://openalex.org/W2107707255","https://openalex.org/W2110171695","https://openalex.org/W2121905803","https://openalex.org/W2123914630","https://openalex.org/W2133429395","https://openalex.org/W2138280093","https://openalex.org/W2144063122","https://openalex.org/W2145002614","https://openalex.org/W2150700412","https://openalex.org/W2153216922","https://openalex.org/W2158373175","https://openalex.org/W2167154952","https://openalex.org/W2167804446","https://openalex.org/W2171437346","https://openalex.org/W2247997571","https://openalex.org/W2284263109","https://openalex.org/W2462326848","https://openalex.org/W2611943439","https://openalex.org/W2620015488","https://openalex.org/W2915554773","https://openalex.org/W2950774417","https://openalex.org/W3123164986","https://openalex.org/W4206542816","https://openalex.org/W4249884416","https://openalex.org/W4251141266"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2045155990","https://openalex.org/W2376932109","https://openalex.org/W4313163053","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W3045811229","https://openalex.org/W4300973204"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
