{"id":"https://openalex.org/W1592790772","doi":"https://doi.org/10.1007/978-3-642-17722-4_16","title":"Facing the Challenges of Genome Information Systems: A Variation Analysis Prototype","display_name":"Facing the Challenges of Genome Information Systems: A Variation Analysis Prototype","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W1592790772","doi":"https://doi.org/10.1007/978-3-642-17722-4_16","mag":"1592790772"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-17722-4_16","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-17722-4_16","pdf_url":"https://link.springer.com/content/pdf/10.1007/978-3-642-17722-4_16.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/978-3-642-17722-4_16.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005818021","display_name":"Ana Mart\u0131\u0301nez","orcid":"https://orcid.org/0000-0002-0515-1946"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ana M. Mart\u00ednez","raw_affiliation_strings":["Centro de Investigaci\u00f3n en M\u00e9todos de Producci\u00f3n de Software, Universidad Polit\u00e9cnica de Valencia, Camino de Vera S/N, 46022, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n en M\u00e9todos de Producci\u00f3n de Software, Universidad Polit\u00e9cnica de Valencia, Camino de Vera S/N, 46022, Valencia, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055210598","display_name":"Ainoha Mart\u00edn","orcid":null},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ainoha Mart\u00edn","raw_affiliation_strings":["Centro de Investigaci\u00f3n en M\u00e9todos de Producci\u00f3n de Software, Universidad Polit\u00e9cnica de Valencia, Camino de Vera S/N, 46022, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n en M\u00e9todos de Producci\u00f3n de Software, Universidad Polit\u00e9cnica de Valencia, Camino de Vera S/N, 46022, Valencia, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041917572","display_name":"Mar\u00eda Jos\u00e9 Villanueva","orcid":"https://orcid.org/0000-0001-6033-9776"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Maria Jos\u00e9 Villanueva","raw_affiliation_strings":["Centro de Investigaci\u00f3n en M\u00e9todos de Producci\u00f3n de Software, Universidad Polit\u00e9cnica de Valencia, Camino de Vera S/N, 46022, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n en M\u00e9todos de Producci\u00f3n de Software, Universidad Polit\u00e9cnica de Valencia, Camino de Vera S/N, 46022, Valencia, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023163920","display_name":"Francisco Valverde","orcid":"https://orcid.org/0000-0002-2316-664X"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Francisco Valverde","raw_affiliation_strings":["Centro de Investigaci\u00f3n en M\u00e9todos de Producci\u00f3n de Software, Universidad Polit\u00e9cnica de Valencia, Camino de Vera S/N, 46022, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n en M\u00e9todos de Producci\u00f3n de Software, Universidad Polit\u00e9cnica de Valencia, Camino de Vera S/N, 46022, Valencia, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073277195","display_name":"Ana M. Lev\u00edn","orcid":null},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ana M. Levin","raw_affiliation_strings":["Centro de Investigaci\u00f3n en M\u00e9todos de Producci\u00f3n de Software, Universidad Polit\u00e9cnica de Valencia, Camino de Vera S/N, 46022, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n en M\u00e9todos de Producci\u00f3n de Software, Universidad Polit\u00e9cnica de Valencia, Camino de Vera S/N, 46022, Valencia, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028443098","display_name":"\u00d3scar Pastor","orcid":"https://orcid.org/0000-0002-1320-8471"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Oscar Pastor","raw_affiliation_strings":["Centro de Investigaci\u00f3n en M\u00e9todos de Producci\u00f3n de Software, Universidad Polit\u00e9cnica de Valencia, Camino de Vera S/N, 46022, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n en M\u00e9todos de Producci\u00f3n de Software, Universidad Polit\u00e9cnica de Valencia, Camino de Vera S/N, 46022, Valencia, Spain","institution_ids":["https://openalex.org/I60053951"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I60053951"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":{"value":5000,"currency":"EUR","value_usd":5392},"fwci":2.1764,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.87431694,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"222","last_page":"237"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8107935190200806},{"id":"https://openalex.org/keywords/variation","display_name":"Variation (astronomy)","score":0.4966588616371155},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.483997106552124},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.42098474502563477},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4019477665424347},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3747639060020447},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12769371271133423}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8107935190200806},{"id":"https://openalex.org/C2778334786","wikidata":"https://www.wikidata.org/wiki/Q1586270","display_name":"Variation (astronomy)","level":2,"score":0.4966588616371155},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.483997106552124},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.42098474502563477},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4019477665424347},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3747639060020447},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12769371271133423},{"id":"https://openalex.org/C44870925","wikidata":"https://www.wikidata.org/wiki/Q37547","display_name":"Astrophysics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-17722-4_16","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-17722-4_16","pdf_url":"https://link.springer.com/content/pdf/10.1007/978-3-642-17722-4_16.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.204.4231","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.204.4231","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://sunsite.informatik.rwth-aachen.de/Publications/CEUR-WS/Vol-592/PaperDemo02.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1007/978-3-642-17722-4_16","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-17722-4_16","pdf_url":"https://link.springer.com/content/pdf/10.1007/978-3-642-17722-4_16.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1592790772.pdf","grobid_xml":"https://content.openalex.org/works/W1592790772.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W46710029","https://openalex.org/W1523184202","https://openalex.org/W1982448890","https://openalex.org/W1987792968","https://openalex.org/W1990163070","https://openalex.org/W1994458586","https://openalex.org/W2000729083","https://openalex.org/W2020620545","https://openalex.org/W2033233381","https://openalex.org/W2055043387","https://openalex.org/W2075656203","https://openalex.org/W2088739386","https://openalex.org/W2103017472","https://openalex.org/W2103487267","https://openalex.org/W2109972881","https://openalex.org/W2126466006","https://openalex.org/W2127230663","https://openalex.org/W2128374023","https://openalex.org/W2136145671","https://openalex.org/W2143885206","https://openalex.org/W2148984584","https://openalex.org/W2155741020","https://openalex.org/W2160948978","https://openalex.org/W2741340870","https://openalex.org/W4235019056"],"related_works":["https://openalex.org/W2386430105","https://openalex.org/W2356521405","https://openalex.org/W2038534795","https://openalex.org/W2384358604","https://openalex.org/W1567829292","https://openalex.org/W3001063351","https://openalex.org/W3196905815","https://openalex.org/W2351370765","https://openalex.org/W3133811809","https://openalex.org/W2321594810"],"abstract_inverted_index":{"In":[0,115],"Bioinformatics":[1],"there":[2],"is":[3,23,64,78,113],"a":[4,20,25,53,89,98,105,118,125,137],"lack":[5],"of":[6,27,41,49,59,67,120,122],"software":[7],"tools":[8,36,51],"that":[9],"fit":[10],"with":[11],"the":[12,47,60,65],"requirements":[13],"demanded":[14],"by":[15],"biologists.":[16],"For":[17],"instance,":[18],"when":[19],"DNA":[21],"sample":[22],"sequenced,":[24],"lot":[26],"work":[28,84],"have":[29],"to":[30,72,87,101,108],"be":[31],"performed":[32],"manually":[33],"and":[34],"several":[35],"are":[37],"used.":[38],"The":[39],"application":[40],"Information":[42,91],"Systems":[43],"(IS)":[44],"principles":[45],"into":[46,80],"development":[48,138],"bioinformatics":[50],"opens":[52],"new":[54],"interesting":[55],"research":[56],"path.":[57],"One":[58],"most":[61],"promising":[62],"approaches":[63],"use":[66],"conceptual":[68,106,134],"models":[69],"in":[70],"order":[71],"precisely":[73],"define":[74],"how":[75,86],"genomic":[76,111],"data":[77],"represented":[79],"an":[81],"IS.":[82],"This":[83],"introduces":[85],"build":[88],"Genome":[90],"System":[92],"(GIS)":[93],"using":[94,132],"these":[95],"principles.":[96],"As":[97],"first":[99],"step":[100],"achieve":[102],"this":[103,123,133],"goal,":[104],"model":[107,135],"formally":[109],"describe":[110],"mutations":[112],"presented.":[114],"addition,":[116],"as":[117,136],"proof":[119],"concept":[121],"approach,":[124],"variation":[126],"analysis":[127],"prototype":[128],"has":[129],"been":[130],"implemented":[131],"core.":[139]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
