{"id":"https://openalex.org/W2287132924","doi":"https://doi.org/10.1007/978-3-642-16345-6_21","title":"Protein Interaction Networks: Protein Domain Interaction and Protein Function Prediction","display_name":"Protein Interaction Networks: Protein Domain Interaction and Protein Function Prediction","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2287132924","doi":"https://doi.org/10.1007/978-3-642-16345-6_21","mag":"2287132924"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-16345-6_21","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-16345-6_21","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Handbook of Statistical Bioinformatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101887931","display_name":"Yanjun Qi","orcid":"https://orcid.org/0000-0002-5796-7453"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yanjun Qi","raw_affiliation_strings":["Machine Learning Department, NEC Labs America, Princeton, USA"],"affiliations":[{"raw_affiliation_string":"Machine Learning Department, NEC Labs America, Princeton, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057375933","display_name":"William Stafford Noble","orcid":"https://orcid.org/0000-0001-7283-4715"},"institutions":[{"id":"https://openalex.org/I58610484","display_name":"Seattle University","ror":"https://ror.org/02jqc0m91","country_code":"US","type":"education","lineage":["https://openalex.org/I58610484"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"William Stafford Noble","raw_affiliation_strings":["Department of Genome Sciences, Department of Computer Science and Engineering, University of Washington, Seattle, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genome Sciences, Department of Computer Science and Engineering, University of Washington, Seattle, USA","institution_ids":["https://openalex.org/I201448701","https://openalex.org/I58610484"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5057375933"],"corresponding_institution_ids":["https://openalex.org/I201448701","https://openalex.org/I58610484"],"apc_list":null,"apc_paid":null,"fwci":4.239,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.93903125,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"427","last_page":"459"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.7529053688049316},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6257872581481934},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.6206883192062378},{"id":"https://openalex.org/keywords/protein-interaction-networks","display_name":"Protein Interaction Networks","score":0.6003771424293518},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.547071099281311},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.5385130643844604},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5247697234153748},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.45488500595092773},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.4497690498828888},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.43379032611846924},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.4304797947406769},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34771209955215454},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32399141788482666},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14316782355308533},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10077053308486938}],"concepts":[{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.7529053688049316},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6257872581481934},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.6206883192062378},{"id":"https://openalex.org/C2909613950","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Protein Interaction Networks","level":3,"score":0.6003771424293518},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.547071099281311},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.5385130643844604},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5247697234153748},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45488500595092773},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.4497690498828888},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.43379032611846924},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.4304797947406769},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34771209955215454},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32399141788482666},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14316782355308533},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10077053308486938},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-16345-6_21","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-16345-6_21","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Handbook of Statistical Bioinformatics","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.214.3482","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.214.3482","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www-2.cs.cmu.edu/%7Eqyj/papersA08/ppipdibookch10.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":108,"referenced_works":["https://openalex.org/W3196423","https://openalex.org/W86169340","https://openalex.org/W155855048","https://openalex.org/W391985582","https://openalex.org/W1479807131","https://openalex.org/W1486817521","https://openalex.org/W1511160855","https://openalex.org/W1571895549","https://openalex.org/W1585529040","https://openalex.org/W1774304772","https://openalex.org/W1976386441","https://openalex.org/W1977970897","https://openalex.org/W1994803330","https://openalex.org/W2001457899","https://openalex.org/W2010795172","https://openalex.org/W2011986160","https://openalex.org/W2012771329","https://openalex.org/W2013502943","https://openalex.org/W2014594785","https://openalex.org/W2017102965","https://openalex.org/W2021025020","https://openalex.org/W2029574260","https://openalex.org/W2030811942","https://openalex.org/W2037036397","https://openalex.org/W2040411864","https://openalex.org/W2042210880","https://openalex.org/W2045131140","https://openalex.org/W2046618236","https://openalex.org/W2047990563","https://openalex.org/W2048740764","https://openalex.org/W2049871748","https://openalex.org/W2050721857","https://openalex.org/W2057885377","https://openalex.org/W2061526129","https://openalex.org/W2074104861","https://openalex.org/W2077398039","https://openalex.org/W2077997913","https://openalex.org/W2080182143","https://openalex.org/W2080922074","https://openalex.org/W2084619201","https://openalex.org/W2090766471","https://openalex.org/W2097266862","https://openalex.org/W2097282516","https://openalex.org/W2099862356","https://openalex.org/W2100827857","https://openalex.org/W2101181377","https://openalex.org/W2102281458","https://openalex.org/W2103017472","https://openalex.org/W2103729016","https://openalex.org/W2106483643","https://openalex.org/W2107107106","https://openalex.org/W2107213743","https://openalex.org/W2109248504","https://openalex.org/W2109715166","https://openalex.org/W2111316763","https://openalex.org/W2113120455","https://openalex.org/W2113613985","https://openalex.org/W2113654464","https://openalex.org/W2116504907","https://openalex.org/W2117035344","https://openalex.org/W2121893605","https://openalex.org/W2122252662","https://openalex.org/W2123012927","https://openalex.org/W2123500593","https://openalex.org/W2124649441","https://openalex.org/W2127637605","https://openalex.org/W2127935186","https://openalex.org/W2128817214","https://openalex.org/W2131094547","https://openalex.org/W2131456688","https://openalex.org/W2132452995","https://openalex.org/W2133138357","https://openalex.org/W2134319472","https://openalex.org/W2136957665","https://openalex.org/W2137971060","https://openalex.org/W2138582694","https://openalex.org/W2139823104","https://openalex.org/W2143881057","https://openalex.org/W2146529782","https://openalex.org/W2147461734","https://openalex.org/W2147736120","https://openalex.org/W2147774652","https://openalex.org/W2149148688","https://openalex.org/W2149310258","https://openalex.org/W2150291731","https://openalex.org/W2150452800","https://openalex.org/W2153577994","https://openalex.org/W2153838454","https://openalex.org/W2156386646","https://openalex.org/W2157346087","https://openalex.org/W2158564991","https://openalex.org/W2159126118","https://openalex.org/W2159944419","https://openalex.org/W2166020074","https://openalex.org/W2166468869","https://openalex.org/W2167869241","https://openalex.org/W2171403830","https://openalex.org/W2171692650","https://openalex.org/W2396060883","https://openalex.org/W2963587356","https://openalex.org/W3199143553","https://openalex.org/W4252706339","https://openalex.org/W4285719527","https://openalex.org/W6628746421","https://openalex.org/W6638285678","https://openalex.org/W6655027587","https://openalex.org/W6675925752","https://openalex.org/W6676274861"],"related_works":["https://openalex.org/W2593939008","https://openalex.org/W2414873431","https://openalex.org/W4205349832","https://openalex.org/W2015534509","https://openalex.org/W2586268529","https://openalex.org/W2001682816","https://openalex.org/W2952660917","https://openalex.org/W2287132924","https://openalex.org/W2125650596","https://openalex.org/W2154613611"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
