{"id":"https://openalex.org/W2155705877","doi":"https://doi.org/10.1007/978-3-642-15294-8_17","title":"Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data","display_name":"Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W2155705877","doi":"https://doi.org/10.1007/978-3-642-15294-8_17","mag":"2155705877"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-15294-8_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-15294-8_17","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036625529","display_name":"Marius Nicolae","orcid":"https://orcid.org/0000-0002-5667-3189"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Marius Nicolae","raw_affiliation_strings":["Computer Science & Engineering Department, University of Connecticut, 371 Fairfield Way, Storrs, CT, 06269, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science & Engineering Department, University of Connecticut, 371 Fairfield Way, Storrs, CT, 06269, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017101305","display_name":"Serghei Mangul","orcid":"https://orcid.org/0000-0003-4770-3443"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Serghei Mangul","raw_affiliation_strings":["Computer Science Department, Georgia State University, University Plaza, Atlanta, 30303, Georgia"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, Georgia State University, University Plaza, Atlanta, 30303, Georgia","institution_ids":["https://openalex.org/I181565077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014788373","display_name":"Ion M\u0103ndoiu","orcid":"https://orcid.org/0000-0002-4818-0237"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ion M\u0103ndoiu","raw_affiliation_strings":["Computer Science & Engineering Department, University of Connecticut, 371 Fairfield Way, Storrs, CT, 06269, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science & Engineering Department, University of Connecticut, 371 Fairfield Way, Storrs, CT, 06269, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072751459","display_name":"Alex Zelikovsky","orcid":"https://orcid.org/0000-0003-4424-4691"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex Zelikovsky","raw_affiliation_strings":["Computer Science Department, Georgia State University, University Plaza, Atlanta, 30303, Georgia"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, Georgia State University, University Plaza, Atlanta, 30303, Georgia","institution_ids":["https://openalex.org/I181565077"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5036625529"],"corresponding_institution_ids":["https://openalex.org/I140172145"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":10.276,"has_fulltext":false,"cited_by_count":33,"citation_normalized_percentile":{"value":0.98536585,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"202","last_page":"214"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7133816480636597},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.6133925914764404},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.590191125869751},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.578312337398529},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5074257254600525},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.47883084416389465},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.47250282764434814},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41684624552726746},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.34878093004226685},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.3469359874725342},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.3255079984664917},{"id":"https://openalex.org/keywords/gene-isoform","display_name":"Gene isoform","score":0.3210066854953766},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.29180240631103516},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18196755647659302},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1813567876815796},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1328415870666504}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7133816480636597},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.6133925914764404},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.590191125869751},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.578312337398529},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5074257254600525},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.47883084416389465},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.47250282764434814},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41684624552726746},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.34878093004226685},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.3469359874725342},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.3255079984664917},{"id":"https://openalex.org/C53345823","wikidata":"https://www.wikidata.org/wiki/Q5531554","display_name":"Gene isoform","level":3,"score":0.3210066854953766},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.29180240631103516},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18196755647659302},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1813567876815796},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1328415870666504},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-15294-8_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-15294-8_17","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W144334492","https://openalex.org/W1973838650","https://openalex.org/W1981509058","https://openalex.org/W2000875411","https://openalex.org/W2011753019","https://openalex.org/W2024819063","https://openalex.org/W2030914835","https://openalex.org/W2038230536","https://openalex.org/W2039701036","https://openalex.org/W2086323500","https://openalex.org/W2097065948","https://openalex.org/W2097117811","https://openalex.org/W2099468911","https://openalex.org/W2100448568","https://openalex.org/W2107564978","https://openalex.org/W2108058966","https://openalex.org/W2112491476","https://openalex.org/W2113386140","https://openalex.org/W2114504176","https://openalex.org/W2124985265","https://openalex.org/W2132341951","https://openalex.org/W2133090587","https://openalex.org/W2138773756","https://openalex.org/W2140544891","https://openalex.org/W2141458291","https://openalex.org/W2154431984","https://openalex.org/W2154537630","https://openalex.org/W2155011418","https://openalex.org/W2155804510","https://openalex.org/W2157770058","https://openalex.org/W2160164696","https://openalex.org/W2168165642","https://openalex.org/W2169095038","https://openalex.org/W2187417714"],"related_works":["https://openalex.org/W4362511652","https://openalex.org/W2904939684","https://openalex.org/W4362511917","https://openalex.org/W2321791250","https://openalex.org/W4362511922","https://openalex.org/W2081598294","https://openalex.org/W2012312817","https://openalex.org/W4213427798","https://openalex.org/W4362530184","https://openalex.org/W2090969926"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":6}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
