{"id":"https://openalex.org/W2142071501","doi":"https://doi.org/10.1007/978-3-642-15034-0_10","title":"The Living Cell as a Multi-agent Organisation: A Compositional Organisation Model of Intracellular Dynamics","display_name":"The Living Cell as a Multi-agent Organisation: A Compositional Organisation Model of Intracellular Dynamics","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W2142071501","doi":"https://doi.org/10.1007/978-3-642-15034-0_10","mag":"2142071501"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-15034-0_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-15034-0_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074074791","display_name":"Catholijn M. Jonker","orcid":"https://orcid.org/0000-0003-4780-7461"},"institutions":[{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"C. M. Jonker","raw_affiliation_strings":["Department of Artificial Intelligence, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands, EU"],"affiliations":[{"raw_affiliation_string":"Department of Artificial Intelligence, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands, EU","institution_ids":["https://openalex.org/I865915315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020530809","display_name":"Jacky L. Snoep","orcid":"https://orcid.org/0000-0002-0405-8854"},"institutions":[{"id":"https://openalex.org/I26092322","display_name":"Stellenbosch University","ror":"https://ror.org/05bk57929","country_code":"ZA","type":"education","lineage":["https://openalex.org/I26092322"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"J. L. Snoep","raw_affiliation_strings":["Department of Biochemistry, University of Stellenbosch, Stellenbosch, South Africa","Department of Molecular Cell Physiology, BioCentrum Amsterdam, HV Amsterdam, The Netherlands, EU"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Stellenbosch, Stellenbosch, South Africa","institution_ids":["https://openalex.org/I26092322"]},{"raw_affiliation_string":"Department of Molecular Cell Physiology, BioCentrum Amsterdam, HV Amsterdam, The Netherlands, EU","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083304312","display_name":"Jan Treur","orcid":"https://orcid.org/0000-0003-2466-9158"},"institutions":[{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"J. Treur","raw_affiliation_strings":["Department of Artificial Intelligence, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands, EU"],"affiliations":[{"raw_affiliation_string":"Department of Artificial Intelligence, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands, EU","institution_ids":["https://openalex.org/I865915315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043470360","display_name":"Hans V. Westerhoff","orcid":"https://orcid.org/0000-0002-0443-6114"},"institutions":[{"id":"https://openalex.org/I26092322","display_name":"Stellenbosch University","ror":"https://ror.org/05bk57929","country_code":"ZA","type":"education","lineage":["https://openalex.org/I26092322"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"H. V. Westerhoff","raw_affiliation_strings":["Department of Molecular Cell Physiology, BioCentrum Amsterdam, HV Amsterdam, The Netherlands, EU","Stellenbosch Institute for Advanced Study, South Africa"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Cell Physiology, BioCentrum Amsterdam, HV Amsterdam, The Netherlands, EU","institution_ids":[]},{"raw_affiliation_string":"Stellenbosch Institute for Advanced Study, South Africa","institution_ids":["https://openalex.org/I26092322"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052129966","display_name":"Wouter C. A. Wijngaards","orcid":null},"institutions":[{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"W. C. A. Wijngaards","raw_affiliation_strings":["Department of Artificial Intelligence, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands, EU"],"affiliations":[{"raw_affiliation_string":"Department of Artificial Intelligence, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands, EU","institution_ids":["https://openalex.org/I865915315"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5074074791"],"corresponding_institution_ids":["https://openalex.org/I865915315"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.16639124,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"160","last_page":"206"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11810","display_name":"Complex Systems and Decision Making","score":0.9779999852180481,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9692999720573425,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dynamics","display_name":"Dynamics (music)","score":0.6165747046470642},{"id":"https://openalex.org/keywords/abstraction","display_name":"Abstraction","score":0.5146373510360718},{"id":"https://openalex.org/keywords/perspective","display_name":"Perspective (graphical)","score":0.4754191040992737},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4711134731769562},{"id":"https://openalex.org/keywords/management-science","display_name":"Management science","score":0.4549108147621155},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4405924379825592},{"id":"https://openalex.org/keywords/system-dynamics","display_name":"System dynamics","score":0.4337441921234131},{"id":"https://openalex.org/keywords/process-management","display_name":"Process management","score":0.40275657176971436},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.4023212790489197},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.3623335063457489},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.30918973684310913},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22580868005752563},{"id":"https://openalex.org/keywords/sociology","display_name":"Sociology","score":0.18638283014297485},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.16402864456176758}],"concepts":[{"id":"https://openalex.org/C145912823","wikidata":"https://www.wikidata.org/wiki/Q113558","display_name":"Dynamics (music)","level":2,"score":0.6165747046470642},{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.5146373510360718},{"id":"https://openalex.org/C12713177","wikidata":"https://www.wikidata.org/wiki/Q1900281","display_name":"Perspective (graphical)","level":2,"score":0.4754191040992737},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4711134731769562},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.4549108147621155},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4405924379825592},{"id":"https://openalex.org/C77405623","wikidata":"https://www.wikidata.org/wiki/Q598451","display_name":"System dynamics","level":2,"score":0.4337441921234131},{"id":"https://openalex.org/C195094911","wikidata":"https://www.wikidata.org/wiki/Q14167904","display_name":"Process management","level":1,"score":0.40275657176971436},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.4023212790489197},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.3623335063457489},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.30918973684310913},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22580868005752563},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.18638283014297485},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.16402864456176758},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1007/978-3-642-15034-0_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-15034-0_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.207.3300","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.207.3300","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.vu.nl/~wai/Papers/TCCI10cellorg.pdf","raw_type":"text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/5bfb60b2-e258-4bee-9196-e7f411da62bc","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/5bfb60b2-e258-4bee-9196-e7f411da62bc","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Jonker, C M, Snoep, J L, Treur, J, Westerhoff, H V & Wijngaards, W C A 2010, The living cell as a multi-agent organisation: A compositional organisation model of intracellular dynamics. in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. vol. 6220, pp. 160-206, 1st International Conference on Computational Collective Intelligence: Semantic Web, Social Networks and Multiagent Systems, ICCCI 2009, Wroclaw, 1/07/10. https://doi.org/10.1007/978-3-642-15034-0_10","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:pure.atira.dk:publications/5bfb60b2-e258-4bee-9196-e7f411da62bc","is_oa":false,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/the-living-cell-as-a-multiagent-organisation-a-compositional-organisation-model-of-intracellular-dynamics(5bfb60b2-e258-4bee-9196-e7f411da62bc).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Jonker, C M, Snoep, J L, Treur, J, Westerhoff, H V & Wijngaards, W C A 2010, The living cell as a multi-agent organisation: A compositional organisation model of intracellular dynamics. in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. vol. 6220, pp. 160-206, 1st International Conference on Computational Collective Intelligence: Semantic Web, Social Networks and Multiagent Systems, ICCCI 2009, Wroclaw, 1/07/10. https://doi.org/10.1007/978-3-642-15034-0_10","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:scholar.sun.ac.za:10019.1/12298","is_oa":false,"landing_page_url":"http://hdl.handle.net/10019.1/12298","pdf_url":null,"source":{"id":"https://openalex.org/S4306400300","display_name":"SUNScholar (Stellenbosch University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I26092322","host_organization_name":"Stellenbosch University","host_organization_lineage":["https://openalex.org/I26092322"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"},{"id":"pmh:vu:oai:research.vu.nl:publications/6d184dde-4c1b-4453-a93d-ab8cd2e45207","is_oa":false,"landing_page_url":"https://research.vu.nl/en/publications/6d184dde-4c1b-4453-a93d-ab8cd2e45207","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Transactions on Computational Collective Intelligence, 1, 160 - 206","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1383124223","display_name":null,"funder_award_id":"BB/F003552/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G1775817677","display_name":null,"funder_award_id":"BB/I00470X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G365880270","display_name":null,"funder_award_id":"BB/I004688/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4125866353","display_name":null,"funder_award_id":"BB/D019079/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G49787296","display_name":null,"funder_award_id":"BB/F003528/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G604149053","display_name":null,"funder_award_id":"BB/F003544/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6978215758","display_name":null,"funder_award_id":"BB/F003536/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W38316647","https://openalex.org/W119826275","https://openalex.org/W163697707","https://openalex.org/W1489074606","https://openalex.org/W1493826535","https://openalex.org/W1506514132","https://openalex.org/W1534363362","https://openalex.org/W1535429593","https://openalex.org/W1579560444","https://openalex.org/W1660272337","https://openalex.org/W1873506857","https://openalex.org/W1898986177","https://openalex.org/W1972866515","https://openalex.org/W1979934740","https://openalex.org/W1992459855","https://openalex.org/W1996202330","https://openalex.org/W2001620484","https://openalex.org/W2011903527","https://openalex.org/W2017739343","https://openalex.org/W2023707182","https://openalex.org/W2031369606","https://openalex.org/W2057178651","https://openalex.org/W2058684276","https://openalex.org/W2076583846","https://openalex.org/W2082672923","https://openalex.org/W2083612495","https://openalex.org/W2089026326","https://openalex.org/W2092196952","https://openalex.org/W2101222524","https://openalex.org/W2102313717","https://openalex.org/W2105627149","https://openalex.org/W2111420033","https://openalex.org/W2119859848","https://openalex.org/W2125814724","https://openalex.org/W2127165194","https://openalex.org/W2135544482","https://openalex.org/W2140209236","https://openalex.org/W2143517204","https://openalex.org/W2145144342","https://openalex.org/W2149185259","https://openalex.org/W2151807147","https://openalex.org/W2156226368","https://openalex.org/W2169104686","https://openalex.org/W2319973481","https://openalex.org/W2432517183","https://openalex.org/W2476891942","https://openalex.org/W2499662517","https://openalex.org/W2611560603","https://openalex.org/W2615688110","https://openalex.org/W2752061190","https://openalex.org/W2752853835","https://openalex.org/W3151939289","https://openalex.org/W4285719527","https://openalex.org/W6737985389"],"related_works":["https://openalex.org/W4211139642","https://openalex.org/W2181721856","https://openalex.org/W2381418473","https://openalex.org/W2032986081","https://openalex.org/W2025879371","https://openalex.org/W1502305485","https://openalex.org/W326831310","https://openalex.org/W826886275","https://openalex.org/W2030005448","https://openalex.org/W4211080513"],"abstract_inverted_index":null,"counts_by_year":[{"year":2014,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
