{"id":"https://openalex.org/W1884601672","doi":"https://doi.org/10.1007/978-3-642-13509-5_29","title":"Optimizing Restriction Site Placement for Synthetic Genomes","display_name":"Optimizing Restriction Site Placement for Synthetic Genomes","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W1884601672","doi":"https://doi.org/10.1007/978-3-642-13509-5_29","mag":"1884601672"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-13509-5_29","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-13509-5_29","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029725553","display_name":"Pablo Fern\u00e1ndez","orcid":"https://orcid.org/0000-0002-8763-0819"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Pablo Montes","raw_affiliation_strings":["Department of Computer Science, Stony Brook University, Stony Brook","[Department of Computer Science, Stony Brook University, Stony Brook, NY]"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stony Brook University, Stony Brook","institution_ids":["https://openalex.org/I59553526"]},{"raw_affiliation_string":"[Department of Computer Science, Stony Brook University, Stony Brook, NY]","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088529188","display_name":"Heraldo Memelli","orcid":"https://orcid.org/0000-0002-2916-4661"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Heraldo Memelli","raw_affiliation_strings":["Department of Computer Science, Stony Brook University, Stony Brook","[Department of Computer Science, Stony Brook University, Stony Brook, NY]"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stony Brook University, Stony Brook","institution_ids":["https://openalex.org/I59553526"]},{"raw_affiliation_string":"[Department of Computer Science, Stony Brook University, Stony Brook, NY]","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005917791","display_name":"Charles B. Ward","orcid":null},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles Ward","raw_affiliation_strings":["Department of Computer Science, Stony Brook University, Stony Brook","[Department of Computer Science, Stony Brook University, Stony Brook, NY]"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stony Brook University, Stony Brook","institution_ids":["https://openalex.org/I59553526"]},{"raw_affiliation_string":"[Department of Computer Science, Stony Brook University, Stony Brook, NY]","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073832121","display_name":"Joondong Kim","orcid":"https://orcid.org/0000-0002-9159-0733"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joondong Kim","raw_affiliation_strings":["Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook","Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook , NY;"],"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook","institution_ids":["https://openalex.org/I59553526"]},{"raw_affiliation_string":"Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook , NY;","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015247956","display_name":"Joseph S. B. Mitchell","orcid":"https://orcid.org/0000-0002-0152-2279"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph S. B. Mitchell","raw_affiliation_strings":["Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook","Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook , NY;"],"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook","institution_ids":["https://openalex.org/I59553526"]},{"raw_affiliation_string":"Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook , NY;","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060741187","display_name":"Steven Skiena","orcid":"https://orcid.org/0000-0003-0397-7514"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven Skiena","raw_affiliation_strings":["Department of Computer Science, Stony Brook University, Stony Brook","[Department of Computer Science, Stony Brook University, Stony Brook, NY]"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stony Brook University, Stony Brook","institution_ids":["https://openalex.org/I59553526"]},{"raw_affiliation_string":"[Department of Computer Science, Stony Brook University, Stony Brook, NY]","institution_ids":["https://openalex.org/I59553526"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5029725553"],"corresponding_institution_ids":["https://openalex.org/I59553526"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.4434,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.83773702,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"323","last_page":"337"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7874895930290222},{"id":"https://openalex.org/keywords/restriction-enzyme","display_name":"Restriction enzyme","score":0.7460260987281799},{"id":"https://openalex.org/keywords/restriction-site","display_name":"Restriction site","score":0.658279538154602},{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.631727397441864},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5604866743087769},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40966030955314636},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3688049912452698},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36470577120780945},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2718404531478882},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1619904637336731}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7874895930290222},{"id":"https://openalex.org/C128319531","wikidata":"https://www.wikidata.org/wiki/Q219715","display_name":"Restriction enzyme","level":3,"score":0.7460260987281799},{"id":"https://openalex.org/C58301748","wikidata":"https://www.wikidata.org/wiki/Q1074969","display_name":"Restriction site","level":4,"score":0.658279538154602},{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.631727397441864},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5604866743087769},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40966030955314636},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3688049912452698},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36470577120780945},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2718404531478882},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1619904637336731},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-13509-5_29","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-13509-5_29","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.4000000059604645}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1544273189","https://openalex.org/W1582225942","https://openalex.org/W1973670059","https://openalex.org/W1980328919","https://openalex.org/W1988304140","https://openalex.org/W2001674944","https://openalex.org/W2040579873","https://openalex.org/W2043170430","https://openalex.org/W2074081003","https://openalex.org/W2080844337","https://openalex.org/W2099763917","https://openalex.org/W2099964107","https://openalex.org/W2101683500","https://openalex.org/W2133620956","https://openalex.org/W2149174733","https://openalex.org/W2150461743","https://openalex.org/W2157529519","https://openalex.org/W2159230317","https://openalex.org/W2171383742","https://openalex.org/W2222512263","https://openalex.org/W2237216796"],"related_works":["https://openalex.org/W3199198580","https://openalex.org/W1436662133","https://openalex.org/W787269129","https://openalex.org/W2000439691","https://openalex.org/W2163480816","https://openalex.org/W2406933241","https://openalex.org/W3092902187","https://openalex.org/W4235228633","https://openalex.org/W11602674","https://openalex.org/W2138790488"],"abstract_inverted_index":null,"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
