{"id":"https://openalex.org/W145588891","doi":"https://doi.org/10.1007/978-3-642-13131-8_2","title":"Principles of Bioimage Informatics: Focus on Machine Learning of Cell Patterns","display_name":"Principles of Bioimage Informatics: Focus on Machine Learning of Cell Patterns","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W145588891","doi":"https://doi.org/10.1007/978-3-642-13131-8_2","mag":"145588891"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-13131-8_2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-13131-8_2","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078114370","display_name":"Lu\u00eds Pedro Coelho","orcid":"https://orcid.org/0000-0002-9280-7885"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I4210133909","display_name":"Center for Translational Research in Neuroimaging and Data Science","ror":"https://ror.org/02qx6zf82","country_code":"US","type":"facility","lineage":["https://openalex.org/I130701444","https://openalex.org/I150468666","https://openalex.org/I181565077","https://openalex.org/I4210133909"]},{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luis Pedro Coelho","raw_affiliation_strings":["Center for Bioimage Informatics, Carnegie Mellon University,","Joint Carnegie Mellon University\u2013University of Pittsburgh Ph.D. Program in Computational Biology,","Lane Center for Computational Biology, Carnegie Mellon University,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioimage Informatics, Carnegie Mellon University,","institution_ids":["https://openalex.org/I4210133909","https://openalex.org/I74973139"]},{"raw_affiliation_string":"Joint Carnegie Mellon University\u2013University of Pittsburgh Ph.D. Program in Computational Biology,","institution_ids":["https://openalex.org/I170201317","https://openalex.org/I74973139"]},{"raw_affiliation_string":"Lane Center for Computational Biology, Carnegie Mellon University,","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050984408","display_name":"Estelle Glory-Afshar","orcid":null},"institutions":[{"id":"https://openalex.org/I4210133909","display_name":"Center for Translational Research in Neuroimaging and Data Science","ror":"https://ror.org/02qx6zf82","country_code":"US","type":"facility","lineage":["https://openalex.org/I130701444","https://openalex.org/I150468666","https://openalex.org/I181565077","https://openalex.org/I4210133909"]},{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Estelle Glory-Afshar","raw_affiliation_strings":["Center for Bioimage Informatics, Carnegie Mellon University,","Department of Biomedical Engineering, Carnegie Mellon University,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioimage Informatics, Carnegie Mellon University,","institution_ids":["https://openalex.org/I4210133909","https://openalex.org/I74973139"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Carnegie Mellon University,","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084941245","display_name":"Joshua Kangas","orcid":"https://orcid.org/0000-0002-6742-5113"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I4210133909","display_name":"Center for Translational Research in Neuroimaging and Data Science","ror":"https://ror.org/02qx6zf82","country_code":"US","type":"facility","lineage":["https://openalex.org/I130701444","https://openalex.org/I150468666","https://openalex.org/I181565077","https://openalex.org/I4210133909"]},{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua Kangas","raw_affiliation_strings":["Center for Bioimage Informatics, Carnegie Mellon University,","Joint Carnegie Mellon University\u2013University of Pittsburgh Ph.D. Program in Computational Biology,","Lane Center for Computational Biology, Carnegie Mellon University,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioimage Informatics, Carnegie Mellon University,","institution_ids":["https://openalex.org/I4210133909","https://openalex.org/I74973139"]},{"raw_affiliation_string":"Joint Carnegie Mellon University\u2013University of Pittsburgh Ph.D. Program in Computational Biology,","institution_ids":["https://openalex.org/I170201317","https://openalex.org/I74973139"]},{"raw_affiliation_string":"Lane Center for Computational Biology, Carnegie Mellon University,","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046164250","display_name":"Shannon Quinn","orcid":"https://orcid.org/0000-0002-8916-6335"},"institutions":[{"id":"https://openalex.org/I4210133909","display_name":"Center for Translational Research in Neuroimaging and Data Science","ror":"https://ror.org/02qx6zf82","country_code":"US","type":"facility","lineage":["https://openalex.org/I130701444","https://openalex.org/I150468666","https://openalex.org/I181565077","https://openalex.org/I4210133909"]},{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shannon Quinn","raw_affiliation_strings":["Center for Bioimage Informatics, Carnegie Mellon University,","Department of Biological Sciences, Carnegie Mellon University,","Lane Center for Computational Biology, Carnegie Mellon University,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioimage Informatics, Carnegie Mellon University,","institution_ids":["https://openalex.org/I4210133909","https://openalex.org/I74973139"]},{"raw_affiliation_string":"Department of Biological Sciences, Carnegie Mellon University,","institution_ids":["https://openalex.org/I74973139"]},{"raw_affiliation_string":"Lane Center for Computational Biology, Carnegie Mellon University,","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030117270","display_name":"Aabid Shariff","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I4210133909","display_name":"Center for Translational Research in Neuroimaging and Data Science","ror":"https://ror.org/02qx6zf82","country_code":"US","type":"facility","lineage":["https://openalex.org/I130701444","https://openalex.org/I150468666","https://openalex.org/I181565077","https://openalex.org/I4210133909"]},{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aabid Shariff","raw_affiliation_strings":["Center for Bioimage Informatics, Carnegie Mellon University,","Joint Carnegie Mellon University\u2013University of Pittsburgh Ph.D. Program in Computational Biology,","Lane Center for Computational Biology, Carnegie Mellon University,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioimage Informatics, Carnegie Mellon University,","institution_ids":["https://openalex.org/I4210133909","https://openalex.org/I74973139"]},{"raw_affiliation_string":"Joint Carnegie Mellon University\u2013University of Pittsburgh Ph.D. Program in Computational Biology,","institution_ids":["https://openalex.org/I170201317","https://openalex.org/I74973139"]},{"raw_affiliation_string":"Lane Center for Computational Biology, Carnegie Mellon University,","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061773929","display_name":"Robert F. Murphy","orcid":"https://orcid.org/0000-0003-0358-901X"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert F. Murphy","raw_affiliation_strings":["Lane Center for Computational Biology, Carnegie Mellon University,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lane Center for Computational Biology, Carnegie Mellon University,","institution_ids":["https://openalex.org/I74973139"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":13.176,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.98824912,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"8","last_page":"18"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9865000247955322,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9853000044822693,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8304282426834106},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6538766622543335},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.5755046010017395},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.571860671043396},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5605836510658264},{"id":"https://openalex.org/keywords/automation","display_name":"Automation","score":0.5495815873146057},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5385308265686035},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.49184322357177734},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.47782066464424133},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.46000272035598755},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3966525197029114},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3875078856945038},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3639345169067383},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.2615817189216614}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8304282426834106},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6538766622543335},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.5755046010017395},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.571860671043396},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5605836510658264},{"id":"https://openalex.org/C115901376","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automation","level":2,"score":0.5495815873146057},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5385308265686035},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.49184322357177734},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.47782066464424133},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.46000272035598755},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3966525197029114},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3875078856945038},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3639345169067383},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.2615817189216614},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-642-13131-8_2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-13131-8_2","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.168.5571","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.168.5571","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://murphylab.web.cmu.edu/publications/168-coelho2010.pdf","raw_type":"text"},{"id":"pmh:oai:eprints.qut.edu.au:252133","is_oa":false,"landing_page_url":"https://rdcu.be/dU1yC","pdf_url":null,"source":{"id":"https://openalex.org/S4306402607","display_name":"QUT ePrints (Queensland University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I160993911","host_organization_name":"Queensland University of Technology","host_organization_lineage":["https://openalex.org/I160993911"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Linking Literature, Information, and Knowledge for Biology: Workshop of the BioLINK Special Interest Group, ISBM/ECCB 2009, Stockholm, June 28-29, 2009, Revised Selected Papers","raw_type":"Chapter in Book, Report or Conference volume"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W1579543411","https://openalex.org/W1591540433","https://openalex.org/W1637956382","https://openalex.org/W1978838832","https://openalex.org/W1993669821","https://openalex.org/W2000266578","https://openalex.org/W2000321279","https://openalex.org/W2003118547","https://openalex.org/W2004883389","https://openalex.org/W2007737306","https://openalex.org/W2023564846","https://openalex.org/W2028201091","https://openalex.org/W2038952578","https://openalex.org/W2045789709","https://openalex.org/W2046799970","https://openalex.org/W2047834789","https://openalex.org/W2076927398","https://openalex.org/W2087618442","https://openalex.org/W2090822423","https://openalex.org/W2104292182","https://openalex.org/W2104311408","https://openalex.org/W2106876831","https://openalex.org/W2107080660","https://openalex.org/W2109516134","https://openalex.org/W2113769434","https://openalex.org/W2113846729","https://openalex.org/W2114291707","https://openalex.org/W2115444722","https://openalex.org/W2116927907","https://openalex.org/W2118765266","https://openalex.org/W2119462282","https://openalex.org/W2121780841","https://openalex.org/W2123491442","https://openalex.org/W2123762916","https://openalex.org/W2127952173","https://openalex.org/W2131172512","https://openalex.org/W2132355119","https://openalex.org/W2142746379","https://openalex.org/W2145752049","https://openalex.org/W2147809341","https://openalex.org/W2149198894","https://openalex.org/W2149251234","https://openalex.org/W2153582254","https://openalex.org/W2153944330","https://openalex.org/W2156201868","https://openalex.org/W2163303168","https://openalex.org/W2163465909","https://openalex.org/W2169805130","https://openalex.org/W2170672297","https://openalex.org/W2411552743","https://openalex.org/W2478283424","https://openalex.org/W2540149843","https://openalex.org/W2555756618","https://openalex.org/W3006156538","https://openalex.org/W3149760511"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W2251519152","https://openalex.org/W4380994516"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
