{"id":"https://openalex.org/W2130419122","doi":"https://doi.org/10.1007/978-3-642-12683-3_20","title":"Compressing Genomic Sequence Fragments Using SlimGene","display_name":"Compressing Genomic Sequence Fragments Using SlimGene","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W2130419122","doi":"https://doi.org/10.1007/978-3-642-12683-3_20","mag":"2130419122"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-12683-3_20","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-12683-3_20","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088317076","display_name":"Christos Kozanitis","orcid":"https://orcid.org/0000-0003-3566-1610"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Christos Kozanitis","raw_affiliation_strings":["University of California San Diego, La Jolla, CA, 92093, USA"],"affiliations":[{"raw_affiliation_string":"University of California San Diego, La Jolla, CA, 92093, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067341694","display_name":"Christopher T. Saunders","orcid":"https://orcid.org/0000-0002-0726-7600"},"institutions":[{"id":"https://openalex.org/I178645029","display_name":"Illumina (United States)","ror":"https://ror.org/05k34t975","country_code":"US","type":"company","lineage":["https://openalex.org/I178645029"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Saunders","raw_affiliation_strings":["Illumina Inc, San Diego, CA, 92121, USA"],"affiliations":[{"raw_affiliation_string":"Illumina Inc, San Diego, CA, 92121, USA","institution_ids":["https://openalex.org/I178645029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017655612","display_name":"Semyon Kruglyak","orcid":"https://orcid.org/0000-0002-8353-1506"},"institutions":[{"id":"https://openalex.org/I178645029","display_name":"Illumina (United States)","ror":"https://ror.org/05k34t975","country_code":"US","type":"company","lineage":["https://openalex.org/I178645029"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Semyon Kruglyak","raw_affiliation_strings":["Illumina Inc, San Diego, CA, 92121, USA"],"affiliations":[{"raw_affiliation_string":"Illumina Inc, San Diego, CA, 92121, USA","institution_ids":["https://openalex.org/I178645029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028801735","display_name":"Vineet Bafna","orcid":"https://orcid.org/0000-0002-5810-6241"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vineet Bafna","raw_affiliation_strings":["University of California San Diego, La Jolla, CA, 92093, USA"],"affiliations":[{"raw_affiliation_string":"University of California San Diego, La Jolla, CA, 92093, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080604095","display_name":"Varghese George","orcid":"https://orcid.org/0000-0003-1497-9603"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"George Varghese","raw_affiliation_strings":["University of California San Diego, La Jolla, CA, 92093, USA"],"affiliations":[{"raw_affiliation_string":"University of California San Diego, La Jolla, CA, 92093, USA","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5088317076"],"corresponding_institution_ids":["https://openalex.org/I36258959"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":3.673,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.94321139,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"310","last_page":"324"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lossy-compression","display_name":"Lossy compression","score":0.8408715724945068},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7866045832633972},{"id":"https://openalex.org/keywords/lossless-compression","display_name":"Lossless compression","score":0.7719484567642212},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.660720705986023},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4712904989719391},{"id":"https://openalex.org/keywords/fragment","display_name":"Fragment (logic)","score":0.45337316393852234},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4384693503379822},{"id":"https://openalex.org/keywords/compression","display_name":"Compression (physics)","score":0.4173371195793152},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3867630064487457},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18650883436203003}],"concepts":[{"id":"https://openalex.org/C165021410","wikidata":"https://www.wikidata.org/wiki/Q55564","display_name":"Lossy compression","level":2,"score":0.8408715724945068},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7866045832633972},{"id":"https://openalex.org/C81081738","wikidata":"https://www.wikidata.org/wiki/Q55542","display_name":"Lossless compression","level":3,"score":0.7719484567642212},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.660720705986023},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4712904989719391},{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.45337316393852234},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4384693503379822},{"id":"https://openalex.org/C180016635","wikidata":"https://www.wikidata.org/wiki/Q2712821","display_name":"Compression (physics)","level":2,"score":0.4173371195793152},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3867630064487457},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18650883436203003},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/978-3-642-12683-3_20","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-12683-3_20","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.212.1653","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.212.1653","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.ucsd.edu/~varghese/PAPERS/genomecompression.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.220.4996","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.220.4996","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://cseweb.ucsd.edu/%7Eckozanit/files/jcb2011_draft.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.371.6847","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.371.6847","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://cseweb.ucsd.edu/users/ckozanit/files/recomb2010.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.4399999976158142}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W2085755265","https://openalex.org/W2108234281","https://openalex.org/W2110553099","https://openalex.org/W2112509895","https://openalex.org/W2116753165","https://openalex.org/W2122962290","https://openalex.org/W2125598538","https://openalex.org/W2146405370","https://openalex.org/W2147492358","https://openalex.org/W2163938152","https://openalex.org/W2164086255","https://openalex.org/W3195259938"],"related_works":["https://openalex.org/W2385628723","https://openalex.org/W4327978137","https://openalex.org/W2372078508","https://openalex.org/W4210455546","https://openalex.org/W3118996461","https://openalex.org/W2394342941","https://openalex.org/W2156834380","https://openalex.org/W4366069710","https://openalex.org/W2350586049","https://openalex.org/W3202870363"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
