{"id":"https://openalex.org/W1505674917","doi":"https://doi.org/10.1007/978-3-642-11712-1_1","title":"Biomodel Engineering \u2013 From Structure to Behavior","display_name":"Biomodel Engineering \u2013 From Structure to Behavior","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W1505674917","doi":"https://doi.org/10.1007/978-3-642-11712-1_1","mag":"1505674917"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-11712-1_1","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-11712-1_1","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070145336","display_name":"Rainer Breitling","orcid":"https://orcid.org/0000-0001-7173-0922"},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Rainer Breitling","raw_affiliation_strings":["Groningen Bioinformatics Centre, University of Groningen, Kerklaan 30, 9751, NN Haren, The Netherlands","Groningen Bioinformatics Centre, University of Groningen, NN Haren, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Groningen Bioinformatics Centre, University of Groningen, Kerklaan 30, 9751, NN Haren, The Netherlands","institution_ids":["https://openalex.org/I169381384"]},{"raw_affiliation_string":"Groningen Bioinformatics Centre, University of Groningen, NN Haren, The Netherlands","institution_ids":["https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071721902","display_name":"Robin Donaldson","orcid":null},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robin A. Donaldson","raw_affiliation_strings":["Bioinformatics Research Centre, University of Glasgow, Glasgow, G12 8QQ, UK","Bioinformatics Research Centre, University of Glasgow, Glasgow, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Centre, University of Glasgow, Glasgow, G12 8QQ, UK","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"Bioinformatics Research Centre, University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102913036","display_name":"David Gilbert","orcid":"https://orcid.org/0000-0002-8872-4294"},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]},{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David R. Gilbert","raw_affiliation_strings":["Bioinformatics Research Centre, University of Glasgow, Glasgow, G12 8QQ, UK","School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge, UB8 3PH, UK","Bioinformatics Research Centre, University of Glasgow, Glasgow, UK","School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Centre, University of Glasgow, Glasgow, G12 8QQ, UK","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge, UB8 3PH, UK","institution_ids":["https://openalex.org/I59433898"]},{"raw_affiliation_string":"Bioinformatics Research Centre, University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge, UK","institution_ids":["https://openalex.org/I59433898"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002026696","display_name":"Monika Heiner","orcid":"https://orcid.org/0000-0003-1815-1205"},"institutions":[{"id":"https://openalex.org/I51783024","display_name":"Brandenburg University of Technology Cottbus-Senftenberg","ror":"https://ror.org/02wxx3e24","country_code":"DE","type":"education","lineage":["https://openalex.org/I51783024"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Monika Heiner","raw_affiliation_strings":["Dept. of Computer Science, Brandenburg University of Technology at Cottbus, Postbox 10 13 44, D 03013, Cottbus, Germany","Dept. of Computer Science, Brandenburg University of Technology at Cottbus, Cottbus, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science, Brandenburg University of Technology at Cottbus, Postbox 10 13 44, D 03013, Cottbus, Germany","institution_ids":["https://openalex.org/I51783024"]},{"raw_affiliation_string":"Dept. of Computer Science, Brandenburg University of Technology at Cottbus, Cottbus, Germany","institution_ids":["https://openalex.org/I51783024"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5070145336"],"corresponding_institution_ids":["https://openalex.org/I169381384"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":13.2084,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.99106628,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7812023162841797},{"id":"https://openalex.org/keywords/petri-net","display_name":"Petri net","score":0.567523717880249},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.5623987913131714},{"id":"https://openalex.org/keywords/synthetic-biology","display_name":"Synthetic biology","score":0.5438244342803955},{"id":"https://openalex.org/keywords/modelling-biological-systems","display_name":"Modelling biological systems","score":0.48557040095329285},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.46349263191223145},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.4258941411972046},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.41978687047958374},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4115583896636963},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3420240581035614},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.24898812174797058},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.15541502833366394},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07779252529144287}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7812023162841797},{"id":"https://openalex.org/C38677869","wikidata":"https://www.wikidata.org/wiki/Q724168","display_name":"Petri net","level":2,"score":0.567523717880249},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.5623987913131714},{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.5438244342803955},{"id":"https://openalex.org/C137866125","wikidata":"https://www.wikidata.org/wiki/Q4299308","display_name":"Modelling biological systems","level":3,"score":0.48557040095329285},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.46349263191223145},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.4258941411972046},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.41978687047958374},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4115583896636963},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3420240581035614},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.24898812174797058},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.15541502833366394},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07779252529144287}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-642-11712-1_1","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-11712-1_1","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:pure.rug.nl:openaire_cris_publications/560a33b9-87e3-4c04-853b-bc9d656ea479","is_oa":false,"landing_page_url":"https://research.rug.nl/en/publications/560a33b9-87e3-4c04-853b-bc9d656ea479","pdf_url":null,"source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Breitling, R, Donaldson, R A, Gilbert, D R & Heiner, M 2010, Biomodel Engineering - From Structure to Behavior. in C Priami, R Breitling, D Gilbert, M Heiner & AM Uhrmacher (eds), TRANSACTIONS ON COMPUTATIONAL SYSTEMS BIOLOGY XII. LECTURE NOTES IN BIOINFORMATICS, vol. 5945, Springer, BERLIN, pp. 1-12, 6th International Conference on Computational Methods in Systems Biology, Germany, 12/10/2008.","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.212.2805","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.212.2805","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.brc.dcs.gla.ac.uk/~rb106x/publications/BioModelEngineeringTCSB2010.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W190590157","https://openalex.org/W324637047","https://openalex.org/W580952738","https://openalex.org/W1017325968","https://openalex.org/W1481475254","https://openalex.org/W1529898704","https://openalex.org/W1532361198","https://openalex.org/W1544529442","https://openalex.org/W1606860353","https://openalex.org/W1979267621","https://openalex.org/W1986397618","https://openalex.org/W1993980414","https://openalex.org/W1997893082","https://openalex.org/W2000815456","https://openalex.org/W2002880495","https://openalex.org/W2009940763","https://openalex.org/W2011835017","https://openalex.org/W2026824634","https://openalex.org/W2053961182","https://openalex.org/W2054779024","https://openalex.org/W2065433068","https://openalex.org/W2073612090","https://openalex.org/W2090703297","https://openalex.org/W2091198609","https://openalex.org/W2092008396","https://openalex.org/W2099396594","https://openalex.org/W2102263388","https://openalex.org/W2104108767","https://openalex.org/W2113983551","https://openalex.org/W2118039525","https://openalex.org/W2118835619","https://openalex.org/W2122792487","https://openalex.org/W2128276963","https://openalex.org/W2131178894","https://openalex.org/W2132980978","https://openalex.org/W2147472054","https://openalex.org/W2148895036","https://openalex.org/W2161621619","https://openalex.org/W2162505680","https://openalex.org/W2167154952","https://openalex.org/W2169804422","https://openalex.org/W2169810918","https://openalex.org/W2340735175","https://openalex.org/W2495597431","https://openalex.org/W2610694850","https://openalex.org/W2913459036","https://openalex.org/W2940404124","https://openalex.org/W2944782266","https://openalex.org/W4238101851","https://openalex.org/W4244074832","https://openalex.org/W4251364655","https://openalex.org/W4256259619"],"related_works":["https://openalex.org/W2024161258","https://openalex.org/W1911418903","https://openalex.org/W2338895903","https://openalex.org/W3044523069","https://openalex.org/W2136248167","https://openalex.org/W2126646394","https://openalex.org/W2057769265","https://openalex.org/W19581480","https://openalex.org/W1987445442","https://openalex.org/W207829213"],"abstract_inverted_index":null,"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":6}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
