{"id":"https://openalex.org/W1541562473","doi":"https://doi.org/10.1007/978-3-642-04744-2_14","title":"Co-evolutionary Models for Reconstructing Ancestral Genomic Sequences: Computational Issues and Biological Examples","display_name":"Co-evolutionary Models for Reconstructing Ancestral Genomic Sequences: Computational Issues and Biological Examples","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W1541562473","doi":"https://doi.org/10.1007/978-3-642-04744-2_14","mag":"1541562473"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-04744-2_14","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-04744-2_14","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7120581","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021278923","display_name":"Tamir Tuller","orcid":"https://orcid.org/0000-0003-4194-7068"},"institutions":[{"id":"https://openalex.org/I25623903","display_name":"College of Management Academic Studies","ror":"https://ror.org/03wmj4s33","country_code":"IL","type":"education","lineage":["https://openalex.org/I25623903"]},{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]},{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Tamir Tuller","raw_affiliation_strings":["Department of Molecular Microbiology and Biotechnology, Israel","Faculty of Mathematics and Computer Science, Weizmann Institute of Science, Israel","School of Computer Science, Israel","School of Medicine, Tel Aviv University, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Microbiology and Biotechnology, Israel","institution_ids":[]},{"raw_affiliation_string":"Faculty of Mathematics and Computer Science, Weizmann Institute of Science, Israel","institution_ids":["https://openalex.org/I53964585"]},{"raw_affiliation_string":"School of Computer Science, Israel","institution_ids":["https://openalex.org/I25623903"]},{"raw_affiliation_string":"School of Medicine, Tel Aviv University, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019753582","display_name":"Hadas Birin","orcid":null},"institutions":[{"id":"https://openalex.org/I25623903","display_name":"College of Management Academic Studies","ror":"https://ror.org/03wmj4s33","country_code":"IL","type":"education","lineage":["https://openalex.org/I25623903"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Hadas Birin","raw_affiliation_strings":["School of Computer Science, Israel"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Israel","institution_ids":["https://openalex.org/I25623903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032235572","display_name":"Martin Kupiec","orcid":"https://orcid.org/0000-0002-7934-3342"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Martin Kupiec","raw_affiliation_strings":["Department of Molecular Microbiology and Biotechnology, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Microbiology and Biotechnology, Israel","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063492133","display_name":"Eytan Ruppin","orcid":"https://orcid.org/0000-0002-7862-3940"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]},{"id":"https://openalex.org/I25623903","display_name":"College of Management Academic Studies","ror":"https://ror.org/03wmj4s33","country_code":"IL","type":"education","lineage":["https://openalex.org/I25623903"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Eytan Ruppin","raw_affiliation_strings":["School of Computer Science, Israel","School of Medicine, Tel Aviv University, Israel"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Israel","institution_ids":["https://openalex.org/I25623903"]},{"raw_affiliation_string":"School of Medicine, Tel Aviv University, Israel","institution_ids":["https://openalex.org/I16391192"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5021278923"],"corresponding_institution_ids":["https://openalex.org/I16391192","https://openalex.org/I25623903","https://openalex.org/I53964585"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.9276,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.75417779,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"164","last_page":"180"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7852741479873657},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7041106224060059},{"id":"https://openalex.org/keywords/maximum-parsimony","display_name":"Maximum parsimony","score":0.6804951429367065},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.6130159497261047},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5530503392219543},{"id":"https://openalex.org/keywords/evolutionary-algorithm","display_name":"Evolutionary algorithm","score":0.4687609374523163},{"id":"https://openalex.org/keywords/computational-complexity-theory","display_name":"Computational complexity theory","score":0.4494577646255493},{"id":"https://openalex.org/keywords/computational-problem","display_name":"Computational problem","score":0.4465944170951843},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.39877474308013916},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3430081009864807},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3368189334869385},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32408249378204346},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2927052676677704},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2874417006969452},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19922780990600586},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1518356204032898}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7852741479873657},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7041106224060059},{"id":"https://openalex.org/C22799545","wikidata":"https://www.wikidata.org/wiki/Q1805805","display_name":"Maximum parsimony","level":5,"score":0.6804951429367065},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.6130159497261047},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5530503392219543},{"id":"https://openalex.org/C159149176","wikidata":"https://www.wikidata.org/wiki/Q14489129","display_name":"Evolutionary algorithm","level":2,"score":0.4687609374523163},{"id":"https://openalex.org/C179799912","wikidata":"https://www.wikidata.org/wiki/Q205084","display_name":"Computational complexity theory","level":2,"score":0.4494577646255493},{"id":"https://openalex.org/C19754495","wikidata":"https://www.wikidata.org/wiki/Q3435924","display_name":"Computational problem","level":2,"score":0.4465944170951843},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.39877474308013916},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3430081009864807},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3368189334869385},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32408249378204346},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2927052676677704},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2874417006969452},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19922780990600586},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1518356204032898},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-04744-2_14","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-04744-2_14","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:pubmedcentral.nih.gov:7120581","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7120581","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Comparative Genomics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:7120581","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7120581","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Comparative Genomics","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":58,"referenced_works":["https://openalex.org/W1525734744","https://openalex.org/W1579352620","https://openalex.org/W1579904015","https://openalex.org/W1810634920","https://openalex.org/W1941675760","https://openalex.org/W1966327236","https://openalex.org/W1982607030","https://openalex.org/W1990894099","https://openalex.org/W1991445188","https://openalex.org/W1992140809","https://openalex.org/W1998695976","https://openalex.org/W1999559563","https://openalex.org/W2034179641","https://openalex.org/W2036370308","https://openalex.org/W2037683394","https://openalex.org/W2038751597","https://openalex.org/W2038978937","https://openalex.org/W2041076979","https://openalex.org/W2045895660","https://openalex.org/W2045934762","https://openalex.org/W2047927900","https://openalex.org/W2053587723","https://openalex.org/W2054291744","https://openalex.org/W2062807748","https://openalex.org/W2065973977","https://openalex.org/W2092006899","https://openalex.org/W2097324953","https://openalex.org/W2101465476","https://openalex.org/W2110065044","https://openalex.org/W2111762123","https://openalex.org/W2113613985","https://openalex.org/W2114075279","https://openalex.org/W2116087481","https://openalex.org/W2119632499","https://openalex.org/W2123808880","https://openalex.org/W2124567458","https://openalex.org/W2126424265","https://openalex.org/W2127218421","https://openalex.org/W2130640131","https://openalex.org/W2131531207","https://openalex.org/W2132101668","https://openalex.org/W2132576704","https://openalex.org/W2137813581","https://openalex.org/W2142664059","https://openalex.org/W2143253866","https://openalex.org/W2146058442","https://openalex.org/W2146728935","https://openalex.org/W2152177254","https://openalex.org/W2158826174","https://openalex.org/W2163892779","https://openalex.org/W2164802746","https://openalex.org/W2170190415","https://openalex.org/W2170975289","https://openalex.org/W2171430493","https://openalex.org/W2188471187","https://openalex.org/W3199943451","https://openalex.org/W4214695391","https://openalex.org/W4254717640"],"related_works":["https://openalex.org/W2784933348","https://openalex.org/W4249702239","https://openalex.org/W2088272905","https://openalex.org/W2901080149","https://openalex.org/W1512399864","https://openalex.org/W4205799190","https://openalex.org/W3203828497","https://openalex.org/W2374430960","https://openalex.org/W4235807378","https://openalex.org/W2792714856"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
