{"id":"https://openalex.org/W2063588956","doi":"https://doi.org/10.1007/978-3-642-04744-2_13","title":"Reconstructing Histories of Complex Gene Clusters on a Phylogeny","display_name":"Reconstructing Histories of Complex Gene Clusters on a Phylogeny","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W2063588956","doi":"https://doi.org/10.1007/978-3-642-04744-2_13","mag":"2063588956"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-04744-2_13","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-04744-2_13","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/0906.2635","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053772564","display_name":"Tom\u00e1\u0161 Vina\u0159","orcid":"https://orcid.org/0000-0003-3898-3447"},"institutions":[{"id":"https://openalex.org/I74788687","display_name":"Comenius University Bratislava","ror":"https://ror.org/0587ef340","country_code":"SK","type":"education","lineage":["https://openalex.org/I74788687"]}],"countries":["SK"],"is_corresponding":true,"raw_author_name":"Tom\u00e1\u0161 Vina\u0159","raw_affiliation_strings":["Faculty of Mathematics, Physics and Informatics, Comenius University, Mlynsk\u00e1 Dolina, 842\u00a048, Bratislava, Slovakia"],"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics, Physics and Informatics, Comenius University, Mlynsk\u00e1 Dolina, 842\u00a048, Bratislava, Slovakia","institution_ids":["https://openalex.org/I74788687"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058053699","display_name":"Bro\u0148a Brejov\u00e1","orcid":"https://orcid.org/0000-0002-9483-1766"},"institutions":[{"id":"https://openalex.org/I74788687","display_name":"Comenius University Bratislava","ror":"https://ror.org/0587ef340","country_code":"SK","type":"education","lineage":["https://openalex.org/I74788687"]}],"countries":["SK"],"is_corresponding":false,"raw_author_name":"Bro\u0148a Brejov\u00e1","raw_affiliation_strings":["Faculty of Mathematics, Physics and Informatics, Comenius University, Mlynsk\u00e1 Dolina, 842\u00a048, Bratislava, Slovakia"],"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics, Physics and Informatics, Comenius University, Mlynsk\u00e1 Dolina, 842\u00a048, Bratislava, Slovakia","institution_ids":["https://openalex.org/I74788687"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012853928","display_name":"Giltae Song","orcid":"https://orcid.org/0000-0001-8796-4678"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Giltae Song","raw_affiliation_strings":["Center for Comparative Genomics and Bioinformatics, 506B Wartik Lab, Penn State University, University Park, PA, 16802, USA"],"affiliations":[{"raw_affiliation_string":"Center for Comparative Genomics and Bioinformatics, 506B Wartik Lab, Penn State University, University Park, PA, 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061240989","display_name":"Adam Siepel","orcid":"https://orcid.org/0000-0002-3557-7219"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Siepel","raw_affiliation_strings":["Dept. of Biological Statistics and Comp. Biology, Cornell University, Ithaca, NY, 14853, USA"],"affiliations":[{"raw_affiliation_string":"Dept. of Biological Statistics and Comp. Biology, Cornell University, Ithaca, NY, 14853, USA","institution_ids":["https://openalex.org/I205783295"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5053772564"],"corresponding_institution_ids":["https://openalex.org/I74788687"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.9061,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.75902518,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":93},"biblio":{"volume":null,"issue":null,"first_page":"150","last_page":"163"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-duplication","display_name":"Gene duplication","score":0.7368414998054504},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.6246920824050903},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5411758422851562},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5019035339355469},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4978358745574951},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.4741089940071106},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.45397117733955383},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.431640088558197},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.429020494222641},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.424932062625885},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3533855080604553},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.33355027437210083},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2634187936782837},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20994621515274048}],"concepts":[{"id":"https://openalex.org/C7602840","wikidata":"https://www.wikidata.org/wiki/Q746284","display_name":"Gene duplication","level":3,"score":0.7368414998054504},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.6246920824050903},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5411758422851562},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5019035339355469},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4978358745574951},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.4741089940071106},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.45397117733955383},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.431640088558197},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.429020494222641},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.424932062625885},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3533855080604553},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.33355027437210083},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2634187936782837},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20994621515274048}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-642-04744-2_13","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-04744-2_13","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:repository.cshl.edu:31042","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402288","display_name":"Cold Spring Harbor Laboratory Institutional Repository (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:arXiv.org:0906.2635","is_oa":true,"landing_page_url":"http://arxiv.org/abs/0906.2635","pdf_url":"https://arxiv.org/pdf/0906.2635","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:0906.2635","is_oa":true,"landing_page_url":"http://arxiv.org/abs/0906.2635","pdf_url":"https://arxiv.org/pdf/0906.2635","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"score":0.6200000047683716,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1519266993","https://openalex.org/W1836809038","https://openalex.org/W1854009489","https://openalex.org/W1966327236","https://openalex.org/W1968904197","https://openalex.org/W1985530443","https://openalex.org/W2009596137","https://openalex.org/W2016263768","https://openalex.org/W2020079665","https://openalex.org/W2030973831","https://openalex.org/W2038564788","https://openalex.org/W2054077314","https://openalex.org/W2056169004","https://openalex.org/W2057998009","https://openalex.org/W2066173565","https://openalex.org/W2092120709","https://openalex.org/W2102210316","https://openalex.org/W2113234327","https://openalex.org/W2114122189","https://openalex.org/W2121883535","https://openalex.org/W2122145467","https://openalex.org/W2125548284","https://openalex.org/W2138309709","https://openalex.org/W2146058063","https://openalex.org/W2149160347","https://openalex.org/W2151229046","https://openalex.org/W2154759645","https://openalex.org/W2154770881","https://openalex.org/W2163293625","https://openalex.org/W2168909179","https://openalex.org/W2740984310","https://openalex.org/W4229487902","https://openalex.org/W4246464108","https://openalex.org/W6730578797"],"related_works":["https://openalex.org/W2174809885","https://openalex.org/W2949296710","https://openalex.org/W2057191541","https://openalex.org/W2883025420","https://openalex.org/W1992658754","https://openalex.org/W2111939425","https://openalex.org/W2065083790","https://openalex.org/W2604174992","https://openalex.org/W2375383082","https://openalex.org/W1974895455"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
