{"id":"https://openalex.org/W1564075136","doi":"https://doi.org/10.1007/978-3-642-04241-6_4","title":"Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored PPI Networks","display_name":"Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored PPI Networks","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W1564075136","doi":"https://doi.org/10.1007/978-3-642-04241-6_4","mag":"1564075136"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-04241-6_4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-04241-6_4","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022850021","display_name":"Phuong Dao","orcid":"https://orcid.org/0000-0001-5285-6271"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Phuong Dao","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001148638","display_name":"Alexander Sch\u00f6nhuth","orcid":"https://orcid.org/0000-0003-3529-0856"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Alexander Sch\u00f6nhuth","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005747594","display_name":"Fereydoun Hormozdiari","orcid":"https://orcid.org/0000-0003-2703-9274"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fereydoun Hormozdiari","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068064308","display_name":"Iman Hajirasouliha","orcid":"https://orcid.org/0000-0002-0600-3371"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Iman Hajirasouliha","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042282214","display_name":"S. Cenk \u015eahinalp","orcid":"https://orcid.org/0000-0002-5050-0682"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"S. Cenk Sahinalp","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018267399","display_name":"Martin Ester","orcid":"https://orcid.org/0000-0001-7732-2815"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Martin Ester","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I18014758"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"37","last_page":"48"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9828000068664551,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7150448560714722},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.7006822228431702},{"id":"https://openalex.org/keywords/multicellular-organism","display_name":"Multicellular organism","score":0.66408371925354},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.5958150625228882},{"id":"https://openalex.org/keywords/binary-number","display_name":"Binary number","score":0.5909239649772644},{"id":"https://openalex.org/keywords/color-coding","display_name":"Color-coding","score":0.5033664107322693},{"id":"https://openalex.org/keywords/enhanced-data-rates-for-gsm-evolution","display_name":"Enhanced Data Rates for GSM Evolution","score":0.49891161918640137},{"id":"https://openalex.org/keywords/confidence-interval","display_name":"Confidence interval","score":0.4246114194393158},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4025815725326538},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.39427635073661804},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22836148738861084},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.2161543369293213},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.198085218667984},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11539620161056519},{"id":"https://openalex.org/keywords/arithmetic","display_name":"Arithmetic","score":0.09417217969894409}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7150448560714722},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.7006822228431702},{"id":"https://openalex.org/C74318829","wikidata":"https://www.wikidata.org/wiki/Q36458","display_name":"Multicellular organism","level":3,"score":0.66408371925354},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.5958150625228882},{"id":"https://openalex.org/C48372109","wikidata":"https://www.wikidata.org/wiki/Q3913","display_name":"Binary number","level":2,"score":0.5909239649772644},{"id":"https://openalex.org/C104597421","wikidata":"https://www.wikidata.org/wiki/Q5148529","display_name":"Color-coding","level":2,"score":0.5033664107322693},{"id":"https://openalex.org/C162307627","wikidata":"https://www.wikidata.org/wiki/Q204833","display_name":"Enhanced Data Rates for GSM Evolution","level":2,"score":0.49891161918640137},{"id":"https://openalex.org/C44249647","wikidata":"https://www.wikidata.org/wiki/Q208498","display_name":"Confidence interval","level":2,"score":0.4246114194393158},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4025815725326538},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.39427635073661804},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22836148738861084},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.2161543369293213},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.198085218667984},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11539620161056519},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.09417217969894409},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-04241-6_4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-04241-6_4","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.157.8829","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.157.8829","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://compbio.cs.sfu.ca/publications/weightedmotif.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W158117962","https://openalex.org/W1503751645","https://openalex.org/W1553420678","https://openalex.org/W1564075136","https://openalex.org/W1565660154","https://openalex.org/W1589421353","https://openalex.org/W1643506661","https://openalex.org/W1966893452","https://openalex.org/W1980074516","https://openalex.org/W2003652380","https://openalex.org/W2037433020","https://openalex.org/W2043107521","https://openalex.org/W2066720893","https://openalex.org/W2080525033","https://openalex.org/W2102039892","https://openalex.org/W2104009289","https://openalex.org/W2110482684","https://openalex.org/W2113613985","https://openalex.org/W2123500593","https://openalex.org/W2137874581","https://openalex.org/W2139939149","https://openalex.org/W2140937045","https://openalex.org/W2148308644","https://openalex.org/W2148762636","https://openalex.org/W2153624566","https://openalex.org/W2171038145","https://openalex.org/W2296148711","https://openalex.org/W6699524668"],"related_works":["https://openalex.org/W17698779","https://openalex.org/W143348934","https://openalex.org/W2170081145","https://openalex.org/W2610440445","https://openalex.org/W2108101990","https://openalex.org/W4236673163","https://openalex.org/W2094822553","https://openalex.org/W2039343069","https://openalex.org/W2170728496","https://openalex.org/W2160491079"],"abstract_inverted_index":null,"counts_by_year":[{"year":2018,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
