{"id":"https://openalex.org/W1788916882","doi":"https://doi.org/10.1007/978-3-642-04241-6_21","title":"mpscan: Fast Localisation of Multiple Reads in Genomes","display_name":"mpscan: Fast Localisation of Multiple Reads in Genomes","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W1788916882","doi":"https://doi.org/10.1007/978-3-642-04241-6_21","mag":"1788916882"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-04241-6_21","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-04241-6_21","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hal-lirmm.ccsd.cnrs.fr/lirmm-00407173","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010392318","display_name":"\u00c9ric Rivals","orcid":"https://orcid.org/0000-0003-3791-3973"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Eric Rivals","raw_affiliation_strings":["LIRMM, CNRS and Universit\u00e9 de Montpellier 2, Montpellier, France","LIRMM, CNRS and Universit\u00e9 de Montpellier 2, Montpellier, France#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIRMM, CNRS and Universit\u00e9 de Montpellier 2, Montpellier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210101743"]},{"raw_affiliation_string":"LIRMM, CNRS and Universit\u00e9 de Montpellier 2, Montpellier, France#TAB#","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210101743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091190630","display_name":"Leena Salmela","orcid":"https://orcid.org/0000-0002-0756-543X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Leena Salmela","raw_affiliation_strings":["Helsinki University of Technology, P.O. Box 5400, FI-02015, TKK, Finland","Helsinki Univ. of Technology, TKK, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Helsinki University of Technology, P.O. Box 5400, FI-02015, TKK, Finland","institution_ids":[]},{"raw_affiliation_string":"Helsinki Univ. of Technology, TKK, Finland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067786419","display_name":"Petteri Kiiskinen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Petteri Kiiskinen","raw_affiliation_strings":["Helsinki University of Technology, P.O. Box 5400, FI-02015, TKK, Finland","Helsinki Univ. of Technology, TKK, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Helsinki University of Technology, P.O. Box 5400, FI-02015, TKK, Finland","institution_ids":[]},{"raw_affiliation_string":"Helsinki Univ. of Technology, TKK, Finland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052889254","display_name":"Petri Kalsi","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Petri Kalsi","raw_affiliation_strings":["LIRMM, CNRS and Universit\u00e9 de Montpellier 2, Montpellier, France","Helsinki Univ. of Technology, TKK, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIRMM, CNRS and Universit\u00e9 de Montpellier 2, Montpellier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210101743"]},{"raw_affiliation_string":"Helsinki Univ. of Technology, TKK, Finland","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033294598","display_name":"Jorma Tarhio","orcid":"https://orcid.org/0000-0003-2455-1985"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jorma Tarhio","raw_affiliation_strings":["Helsinki University of Technology, P.O. Box 5400, FI-02015, TKK, Finland","Helsinki Univ. of Technology, TKK, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Helsinki University of Technology, P.O. Box 5400, FI-02015, TKK, Finland","institution_ids":[]},{"raw_affiliation_string":"Helsinki Univ. of Technology, TKK, Finland","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":13.4967,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.99054874,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"246","last_page":"260"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7319628596305847},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.5878347158432007},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.5865697860717773},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.5809594988822937},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5474470853805542},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5446540713310242},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.516486406326294},{"id":"https://openalex.org/keywords/zoom","display_name":"Zoom","score":0.49831485748291016},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4521888792514801},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.4379199743270874},{"id":"https://openalex.org/keywords/trie","display_name":"Trie","score":0.4148312509059906},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.39266201853752136},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.365700900554657},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.360809862613678},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3521080017089844},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.2513312101364136},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.23733451962471008},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2189236879348755},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14519253373146057},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11246505379676819},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10837063193321228},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10328671336174011}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7319628596305847},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.5878347158432007},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.5865697860717773},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.5809594988822937},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5474470853805542},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5446540713310242},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.516486406326294},{"id":"https://openalex.org/C124913957","wikidata":"https://www.wikidata.org/wiki/Q1232548","display_name":"Zoom","level":3,"score":0.49831485748291016},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4521888792514801},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.4379199743270874},{"id":"https://openalex.org/C190290938","wikidata":"https://www.wikidata.org/wiki/Q387015","display_name":"Trie","level":3,"score":0.4148312509059906},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.39266201853752136},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.365700900554657},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.360809862613678},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3521080017089844},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.2513312101364136},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.23733451962471008},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2189236879348755},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14519253373146057},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11246505379676819},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10837063193321228},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10328671336174011},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C15336307","wikidata":"https://www.wikidata.org/wiki/Q1766051","display_name":"Lens (geology)","level":2,"score":0.0},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-642-04241-6_21","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-04241-6_21","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.156.928","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.156.928","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.lirmm.fr/~rivals/PUBLI/FILES/Rivals-etal-mpscan-LNCS-WABI-09.pdf","raw_type":"text"},{"id":"pmh:oai:HAL:lirmm-00407173v1","is_oa":true,"landing_page_url":"https://hal-lirmm.ccsd.cnrs.fr/lirmm-00407173","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.wabi09.org/","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"pmh:oai:HAL:lirmm-00407173v1","is_oa":true,"landing_page_url":"https://hal-lirmm.ccsd.cnrs.fr/lirmm-00407173","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.wabi09.org/","raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1515839227","https://openalex.org/W1970659131","https://openalex.org/W1973831834","https://openalex.org/W1978660097","https://openalex.org/W1987857466","https://openalex.org/W2002982210","https://openalex.org/W2011280787","https://openalex.org/W2015416439","https://openalex.org/W2042249135","https://openalex.org/W2044684763","https://openalex.org/W2047794824","https://openalex.org/W2055666215","https://openalex.org/W2065579185","https://openalex.org/W2072193858","https://openalex.org/W2092390808","https://openalex.org/W2097117811","https://openalex.org/W2097862362","https://openalex.org/W2102904139","https://openalex.org/W2103706581","https://openalex.org/W2112113834","https://openalex.org/W2124985265","https://openalex.org/W2129795133","https://openalex.org/W2136145671","https://openalex.org/W2138731994","https://openalex.org/W2139760555","https://openalex.org/W2142619120","https://openalex.org/W2143124024","https://openalex.org/W4210951666"],"related_works":["https://openalex.org/W2361361118","https://openalex.org/W2087937280","https://openalex.org/W2503642292","https://openalex.org/W1569389315","https://openalex.org/W2401320555","https://openalex.org/W2188635255","https://openalex.org/W2159309676","https://openalex.org/W2337746918","https://openalex.org/W2167598145","https://openalex.org/W2148315173"],"abstract_inverted_index":null,"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":5}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
