{"id":"https://openalex.org/W1597544338","doi":"https://doi.org/10.1007/978-3-642-03275-2_6","title":"Multi-granularity Parallel Computing in a Genome-Scale Molecular Evolution Application","display_name":"Multi-granularity Parallel Computing in a Genome-Scale Molecular Evolution Application","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W1597544338","doi":"https://doi.org/10.1007/978-3-642-03275-2_6","mag":"1597544338","pmid":"https://pubmed.ncbi.nlm.nih.gov/21841894"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-03275-2_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-03275-2_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021840074","display_name":"Jesse D. Walters","orcid":null},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jesse D. Walters","raw_affiliation_strings":["Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, IA 52242 USA","Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, USA","Department of Electrical and Computer Engineering, University of Iowa, Iowa City, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, IA 52242 USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Iowa, Iowa City, USA","institution_ids":["https://openalex.org/I126307644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073016612","display_name":"Thomas Bair","orcid":null},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas B. Bair","raw_affiliation_strings":["Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, IA, 52242, USA","Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, IA, 52242, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, USA","institution_ids":["https://openalex.org/I126307644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064945246","display_name":"Terry A. Braun","orcid":"https://orcid.org/0000-0003-0055-337X"},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Terry A. Braun","raw_affiliation_strings":["Center for Bioinformatics and Computational Biology, University of Iowa, Iowa City, IA, 52242, USA","Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, IA, 52242, USA","Department of Electrical and Computer Engineering, University of Iowa, Iowa City, IA, 52242, USA","Department of Ophthalmology and Visual Sciences, University of Iowa Email:clcg@eng.uiowa.edu, Iowa City, IA, 52242, USA","Center for Bioinformatics and Computational Biology, University of Iowa, Iowa City, USA","Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, USA","Department of Electrical and Computer Engineering, University of Iowa, Iowa City, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Computational Biology, University of Iowa, Iowa City, IA, 52242, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, IA, 52242, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Iowa, Iowa City, IA, 52242, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Department of Ophthalmology and Visual Sciences, University of Iowa Email:clcg@eng.uiowa.edu, Iowa City, IA, 52242, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Center for Bioinformatics and Computational Biology, University of Iowa, Iowa City, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Iowa, Iowa City, USA","institution_ids":["https://openalex.org/I126307644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029284998","display_name":"Todd E. Scheetz","orcid":"https://orcid.org/0000-0002-1965-5811"},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Todd E. Scheetz","raw_affiliation_strings":["Center for Bioinformatics and Computational Biology, University of Iowa, Iowa City, IA, 52242, USA","Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, IA, 52242, USA","Department of Electrical and Computer Engineering, University of Iowa, Iowa City, IA, 52242, USA","Department of Ophthalmology and Visual Sciences, University of Iowa Email:clcg@eng.uiowa.edu, Iowa City, IA, 52242, USA","Center for Bioinformatics and Computational Biology, University of Iowa, Iowa City, USA","Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, USA","Department of Electrical and Computer Engineering, University of Iowa, Iowa City, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Computational Biology, University of Iowa, Iowa City, IA, 52242, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, IA, 52242, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Iowa, Iowa City, IA, 52242, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Department of Ophthalmology and Visual Sciences, University of Iowa Email:clcg@eng.uiowa.edu, Iowa City, IA, 52242, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Center for Bioinformatics and Computational Biology, University of Iowa, Iowa City, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Iowa, Iowa City, USA","institution_ids":["https://openalex.org/I126307644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043223319","display_name":"John P. Robinson","orcid":"https://orcid.org/0000-0001-9688-3001"},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John P. Robinson","raw_affiliation_strings":["Center for Bioinformatics and Computational Biology, University of Iowa, Iowa City, IA, 52242, USA","Department of Electrical and Computer Engineering, University of Iowa, Iowa City, IA, 52242, USA","Center for Bioinformatics and Computational Biology, University of Iowa, Iowa City, USA","Department of Electrical and Computer Engineering, University of Iowa, Iowa City, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Computational Biology, University of Iowa, Iowa City, IA, 52242, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Iowa, Iowa City, IA, 52242, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Center for Bioinformatics and Computational Biology, University of Iowa, Iowa City, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Iowa, Iowa City, USA","institution_ids":["https://openalex.org/I126307644"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011603476","display_name":"Thomas L. Casavant","orcid":"https://orcid.org/0000-0002-8051-4153"},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas L. Casavant","raw_affiliation_strings":["Center for Bioinformatics and Computational Biology, University of Iowa, Iowa City, IA, 52242, USA","Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, IA, 52242, USA","Department of Biomedical Engineering, University of Iowa, Iowa City, IA, 52242, USA","Department of Electrical and Computer Engineering, University of Iowa, Iowa City, IA, 52242, USA","Center for Bioinformatics and Computational Biology, University of Iowa, Iowa City, USA","Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, USA","Department of Biomedical Engineering, University of Iowa, Iowa City, USA","Department of Electrical and Computer Engineering, University of Iowa, Iowa City, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Computational Biology, University of Iowa, Iowa City, IA, 52242, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, IA, 52242, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Department of Biomedical Engineering, University of Iowa, Iowa City, IA, 52242, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Iowa, Iowa City, IA, 52242, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Center for Bioinformatics and Computational Biology, University of Iowa, Iowa City, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Department of Biomedical Engineering, University of Iowa, Iowa City, USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Iowa, Iowa City, USA","institution_ids":["https://openalex.org/I126307644"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I126307644"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"5698","issue":null,"first_page":"49","last_page":"59"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9751999974250793,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.894905686378479},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8483676910400391},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.6973191499710083},{"id":"https://openalex.org/keywords/granularity","display_name":"Granularity","score":0.5745145678520203},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.47412991523742676},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.4573814570903778},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.36603808403015137},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10205841064453125}],"concepts":[{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.894905686378479},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8483676910400391},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.6973191499710083},{"id":"https://openalex.org/C177774035","wikidata":"https://www.wikidata.org/wiki/Q1246948","display_name":"Granularity","level":2,"score":0.5745145678520203},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.47412991523742676},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.4573814570903778},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.36603808403015137},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10205841064453125},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-642-03275-2_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-03275-2_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmid:21841894","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21841894","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of supercomputing","raw_type":null},{"id":"pmh:oai:europepmc.org:2161423","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3155254","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2521772183","display_name":null,"funder_award_id":"R01 EY017168","funder_id":"https://openalex.org/F4320337350","funder_display_name":"National Eye Institute"},{"id":"https://openalex.org/G2881210072","display_name":null,"funder_award_id":"R01 EY010564","funder_id":"https://openalex.org/F4320337350","funder_display_name":"National Eye Institute"},{"id":"https://openalex.org/G3584172011","display_name":null,"funder_award_id":"R01 HL072288","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G5187804368","display_name":null,"funder_award_id":"R01 DC003544","funder_id":"https://openalex.org/F4320337352","funder_display_name":"National Institute on Deafness and Other Communication Disorders"},{"id":"https://openalex.org/G6812700943","display_name":null,"funder_award_id":"R01 EY011298","funder_id":"https://openalex.org/F4320337350","funder_display_name":"National Eye Institute"}],"funders":[{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337350","display_name":"National Eye Institute","ror":"https://ror.org/03wkg3b53"},{"id":"https://openalex.org/F4320337352","display_name":"National Institute on Deafness and Other Communication Disorders","ror":"https://ror.org/04mhx6838"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1555373975","https://openalex.org/W1579775238","https://openalex.org/W1992122785","https://openalex.org/W2008856488","https://openalex.org/W2037500862","https://openalex.org/W2055043387","https://openalex.org/W2106882534","https://openalex.org/W2120158609","https://openalex.org/W2126373564","https://openalex.org/W2138578706","https://openalex.org/W2150934173","https://openalex.org/W2155606054","https://openalex.org/W2167419310","https://openalex.org/W2168696662","https://openalex.org/W3199943451"],"related_works":["https://openalex.org/W1969153118","https://openalex.org/W2317245370","https://openalex.org/W4249323025","https://openalex.org/W198851386","https://openalex.org/W1980160788","https://openalex.org/W2030310580","https://openalex.org/W947442053","https://openalex.org/W2148915962","https://openalex.org/W4313433561","https://openalex.org/W2283866686"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
