{"id":"https://openalex.org/W1578171303","doi":"https://doi.org/10.1007/978-3-642-03076-5_8","title":"Tiamat: A Three-Dimensional Editing Tool for Complex DNA Structures","display_name":"Tiamat: A Three-Dimensional Editing Tool for Complex DNA Structures","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W1578171303","doi":"https://doi.org/10.1007/978-3-642-03076-5_8","mag":"1578171303"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-03076-5_8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-03076-5_8","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103250875","display_name":"Sean Williams","orcid":"https://orcid.org/0000-0002-3221-3102"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sean Williams","raw_affiliation_strings":["Department of Computer Science, University of California, Davis, CA, 95616"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Davis, CA, 95616","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015544204","display_name":"Kyle Lund","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kyle Lund","raw_affiliation_strings":["Center for Single Molecule Biophysics, The Biodesign Institute, Arizona State University, Tempe, AZ, 85287","Department of Chemistry and Biology, Arizona State University, Tempe, AZ, 85287"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Single Molecule Biophysics, The Biodesign Institute, Arizona State University, Tempe, AZ, 85287","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"Department of Chemistry and Biology, Arizona State University, Tempe, AZ, 85287","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036289724","display_name":"Chenxiang Lin","orcid":"https://orcid.org/0000-0001-7041-1946"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chenxiang Lin","raw_affiliation_strings":["Center for Single Molecule Biophysics, The Biodesign Institute, Arizona State University, Tempe, AZ, 85287","Department of Chemistry and Biology, Arizona State University, Tempe, AZ, 85287"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Single Molecule Biophysics, The Biodesign Institute, Arizona State University, Tempe, AZ, 85287","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"Department of Chemistry and Biology, Arizona State University, Tempe, AZ, 85287","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076768552","display_name":"Peter Wonka","orcid":"https://orcid.org/0000-0003-0627-9746"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter Wonka","raw_affiliation_strings":["School of Computing and Informatics, Arizona State University, Tempe, AZ, 85287"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing and Informatics, Arizona State University, Tempe, AZ, 85287","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089321650","display_name":"Stuart Lindsay","orcid":"https://orcid.org/0000-0002-9364-6542"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stuart Lindsay","raw_affiliation_strings":["Center for Single Molecule Biophysics, The Biodesign Institute, Arizona State University, Tempe, AZ, 85287","Department of Chemistry and Biology, Arizona State University, Tempe, AZ, 85287","Department of Physics and Astronomy, Arizona State University, Tempe, AZ, 85287"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Single Molecule Biophysics, The Biodesign Institute, Arizona State University, Tempe, AZ, 85287","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"Department of Chemistry and Biology, Arizona State University, Tempe, AZ, 85287","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"Department of Physics and Astronomy, Arizona State University, Tempe, AZ, 85287","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064979753","display_name":"Hao Yan","orcid":"https://orcid.org/0000-0001-7397-9852"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hao Yan","raw_affiliation_strings":["Center for Single Molecule Biophysics, The Biodesign Institute, Arizona State University, Tempe, AZ, 85287","Department of Chemistry and Biology, Arizona State University, Tempe, AZ, 85287"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Single Molecule Biophysics, The Biodesign Institute, Arizona State University, Tempe, AZ, 85287","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"Department of Chemistry and Biology, Arizona State University, Tempe, AZ, 85287","institution_ids":["https://openalex.org/I55732556"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":3.2568,"has_fulltext":false,"cited_by_count":131,"citation_normalized_percentile":{"value":0.91847184,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":null,"issue":null,"first_page":"90","last_page":"101"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8463481664657593},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6948047876358032},{"id":"https://openalex.org/keywords/generator","display_name":"Generator (circuit theory)","score":0.6191220879554749},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5343992114067078},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.5165795087814331},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.5131922364234924},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5105301141738892},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.39215996861457825},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.36146625876426697},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3520527482032776},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.27537551522254944},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.11268436908721924},{"id":"https://openalex.org/keywords/power","display_name":"Power (physics)","score":0.07262080907821655}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8463481664657593},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6948047876358032},{"id":"https://openalex.org/C2780992000","wikidata":"https://www.wikidata.org/wiki/Q17016113","display_name":"Generator (circuit theory)","level":3,"score":0.6191220879554749},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5343992114067078},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.5165795087814331},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.5131922364234924},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5105301141738892},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.39215996861457825},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.36146625876426697},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3520527482032776},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.27537551522254944},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.11268436908721924},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.07262080907821655},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-03076-5_8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-03076-5_8","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.668.6978","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.668.6978","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://peterwonka.net/Publications/pdfs/2008.DNAComp.Williams.Tiamat.FinalVersion.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W1567090568","https://openalex.org/W1568288633","https://openalex.org/W1583953270","https://openalex.org/W1974231617","https://openalex.org/W1984610750","https://openalex.org/W1986338554","https://openalex.org/W1991060977","https://openalex.org/W2003422946","https://openalex.org/W2010442668","https://openalex.org/W2011108001","https://openalex.org/W2018847636","https://openalex.org/W2023747155","https://openalex.org/W2024949907","https://openalex.org/W2027489696","https://openalex.org/W2038125628","https://openalex.org/W2042481641","https://openalex.org/W2056215075","https://openalex.org/W2058696766","https://openalex.org/W2066242376","https://openalex.org/W2069584505","https://openalex.org/W2071836755","https://openalex.org/W2072687635","https://openalex.org/W2085523918","https://openalex.org/W2098818518","https://openalex.org/W2126961173","https://openalex.org/W3029645440","https://openalex.org/W3145128584","https://openalex.org/W4248017591","https://openalex.org/W7029321148"],"related_works":["https://openalex.org/W2022968056","https://openalex.org/W3180179400","https://openalex.org/W2118366689","https://openalex.org/W2154998455","https://openalex.org/W2116888309","https://openalex.org/W1649706580","https://openalex.org/W2477652530","https://openalex.org/W2039055059","https://openalex.org/W3195608031","https://openalex.org/W2381088774"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":18},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
