{"id":"https://openalex.org/W2111128292","doi":"https://doi.org/10.1007/978-3-642-02466-5_50","title":"A Bipartite Graph Based Model of Protein Domain Networks","display_name":"A Bipartite Graph Based Model of Protein Domain Networks","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W2111128292","doi":"https://doi.org/10.1007/978-3-642-02466-5_50","mag":"2111128292"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-02466-5_50","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-02466-5_50","pdf_url":null,"source":{"id":"https://openalex.org/S4393917809","display_name":"Lecture notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering","issn_l":"1867-8211","issn":["1867-8211","1867-822X"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029985835","display_name":"Jose C. Nacher","orcid":"https://orcid.org/0000-0002-7187-6152"},"institutions":[{"id":"https://openalex.org/I84400586","display_name":"Future University Hakodate","ror":"https://ror.org/05szw2z23","country_code":"JP","type":"education","lineage":["https://openalex.org/I84400586"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"J. C. Nacher","raw_affiliation_strings":["Department of Complex Systems, Future University-Hakodate, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Complex Systems, Future University-Hakodate, Japan","institution_ids":["https://openalex.org/I84400586"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037589658","display_name":"Tomoshiro Ochiai","orcid":null},"institutions":[{"id":"https://openalex.org/I63216439","display_name":"Toyama Prefectural University","ror":"https://ror.org/03xgh2v50","country_code":"JP","type":"education","lineage":["https://openalex.org/I63216439"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"T. Ochiai","raw_affiliation_strings":["Faculty of Engineering, Toyama Prefectural University, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Engineering, Toyama Prefectural University, Japan","institution_ids":["https://openalex.org/I63216439"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039138118","display_name":"Morihiro Hayashida","orcid":"https://orcid.org/0000-0001-7961-0175"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"M. Hayashida","raw_affiliation_strings":["Bioinformatics Center, Institute for Chemical Research, Kyoto University, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016330265","display_name":"Tatsuya Akutsu","orcid":"https://orcid.org/0000-0001-9763-797X"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"T. Akutsu","raw_affiliation_strings":["Bioinformatics Center, Institute for Chemical Research, Kyoto University, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"525","last_page":"535"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bipartite-graph","display_name":"Bipartite graph","score":0.6053696870803833},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5909460783004761},{"id":"https://openalex.org/keywords/exponential-growth","display_name":"Exponential growth","score":0.4720402956008911},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.458334743976593},{"id":"https://openalex.org/keywords/exponential-function","display_name":"Exponential function","score":0.4509458541870117},{"id":"https://openalex.org/keywords/exponential-distribution","display_name":"Exponential distribution","score":0.442921906709671},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.4176982343196869},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.40792590379714966},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3596636652946472},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.33041083812713623},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3288230001926422},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32046815752983093},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2819907069206238},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1466549038887024},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.13563281297683716},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11270135641098022},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.08573368191719055}],"concepts":[{"id":"https://openalex.org/C197657726","wikidata":"https://www.wikidata.org/wiki/Q174733","display_name":"Bipartite graph","level":3,"score":0.6053696870803833},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5909460783004761},{"id":"https://openalex.org/C75235859","wikidata":"https://www.wikidata.org/wiki/Q582659","display_name":"Exponential growth","level":2,"score":0.4720402956008911},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.458334743976593},{"id":"https://openalex.org/C151376022","wikidata":"https://www.wikidata.org/wiki/Q168698","display_name":"Exponential function","level":2,"score":0.4509458541870117},{"id":"https://openalex.org/C55350006","wikidata":"https://www.wikidata.org/wiki/Q237193","display_name":"Exponential distribution","level":2,"score":0.442921906709671},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.4176982343196869},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.40792590379714966},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3596636652946472},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.33041083812713623},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3288230001926422},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32046815752983093},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2819907069206238},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1466549038887024},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.13563281297683716},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11270135641098022},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.08573368191719055},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-02466-5_50","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-02466-5_50","pdf_url":null,"source":{"id":"https://openalex.org/S4393917809","display_name":"Lecture notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering","issn_l":"1867-8211","issn":["1867-8211","1867-822X"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1503101850","https://openalex.org/W1627599966","https://openalex.org/W1669331355","https://openalex.org/W1932416503","https://openalex.org/W1990316873","https://openalex.org/W1992021819","https://openalex.org/W2005600517","https://openalex.org/W2008620264","https://openalex.org/W2011537561","https://openalex.org/W2016743875","https://openalex.org/W2018045523","https://openalex.org/W2032516423","https://openalex.org/W2057693235","https://openalex.org/W2063252182","https://openalex.org/W2070672503","https://openalex.org/W2088048878","https://openalex.org/W2091378967","https://openalex.org/W2092003722","https://openalex.org/W2110699703","https://openalex.org/W2123501554","https://openalex.org/W2128983184","https://openalex.org/W2130790725","https://openalex.org/W2141885858","https://openalex.org/W2144885342","https://openalex.org/W2147824439","https://openalex.org/W2153624566","https://openalex.org/W2161062388","https://openalex.org/W2163480486","https://openalex.org/W2164928285","https://openalex.org/W2169015768","https://openalex.org/W3103786587","https://openalex.org/W4210323379","https://openalex.org/W4210901545","https://openalex.org/W4211054902"],"related_works":["https://openalex.org/W1634993130","https://openalex.org/W1602624896","https://openalex.org/W32300376","https://openalex.org/W1519862060","https://openalex.org/W2067732275","https://openalex.org/W1974979356","https://openalex.org/W2084061773","https://openalex.org/W2794917831","https://openalex.org/W2104564563","https://openalex.org/W2013108996"],"abstract_inverted_index":null,"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
