{"id":"https://openalex.org/W2074690226","doi":"https://doi.org/10.1007/978-3-642-02008-7_27","title":"Evaluating Between-Pathway Models with Expression Data","display_name":"Evaluating Between-Pathway Models with Expression Data","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W2074690226","doi":"https://doi.org/10.1007/978-3-642-02008-7_27","mag":"2074690226"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-02008-7_27","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-02008-7_27","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073101130","display_name":"Benjamin Hescott","orcid":"https://orcid.org/0000-0002-8179-9496"},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Benjamin J. Hescott","raw_affiliation_strings":["Department of Computer Science, Tufts University, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Tufts University, USA","institution_ids":["https://openalex.org/I121934306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089144841","display_name":"Mark D.M. Leiserson","orcid":"https://orcid.org/0000-0002-1034-4363"},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark D. M. Leiserson","raw_affiliation_strings":["Department of Computer Science, Tufts University, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Tufts University, USA","institution_ids":["https://openalex.org/I121934306"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Lenore J. Cowen","orcid":null},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lenore J. Cowen","raw_affiliation_strings":["Department of Computer Science, Tufts University, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Tufts University, USA","institution_ids":["https://openalex.org/I121934306"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074883462","display_name":"Donna K. Slonim","orcid":"https://orcid.org/0000-0003-3357-437X"},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Donna K. Slonim","raw_affiliation_strings":["Department of Computer Science, Tufts University, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Tufts University, USA","institution_ids":["https://openalex.org/I121934306"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5073101130"],"corresponding_institution_ids":["https://openalex.org/I121934306"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.3935,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.81817285,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"372","last_page":"385"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9850999712944031,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7729253768920898},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.5416988730430603},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5380629301071167},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47918856143951416},{"id":"https://openalex.org/keywords/biological-pathway","display_name":"Biological pathway","score":0.45989468693733215},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3946271538734436},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.31052449345588684},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2947204113006592},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1564154326915741},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15101945400238037}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7729253768920898},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.5416988730430603},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5380629301071167},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47918856143951416},{"id":"https://openalex.org/C9927688","wikidata":"https://www.wikidata.org/wiki/Q4915012","display_name":"Biological pathway","level":4,"score":0.45989468693733215},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3946271538734436},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.31052449345588684},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2947204113006592},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1564154326915741},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15101945400238037},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/978-3-642-02008-7_27","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-02008-7_27","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.160.6888","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.160.6888","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.tufts.edu/~slonim/HLCS09.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.161.1485","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.161.1485","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.tufts.edu/~cowen/validBPM2.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.467.8331","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.467.8331","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bcb.cs.tufts.edu/validatedBPM/files/Evaluating Between-Pathway Models with Expression Data.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W109729257","https://openalex.org/W1491174923","https://openalex.org/W1535333477","https://openalex.org/W1876024155","https://openalex.org/W1981820708","https://openalex.org/W2013520054","https://openalex.org/W2035700705","https://openalex.org/W2039366890","https://openalex.org/W2051903523","https://openalex.org/W2108022229","https://openalex.org/W2112811019","https://openalex.org/W2130410032","https://openalex.org/W2136549265","https://openalex.org/W2139027526","https://openalex.org/W2146264532","https://openalex.org/W2147554928","https://openalex.org/W2157523980","https://openalex.org/W2157935239"],"related_works":["https://openalex.org/W2151866902","https://openalex.org/W2181552472","https://openalex.org/W4246477514","https://openalex.org/W2157193718","https://openalex.org/W2120108543","https://openalex.org/W2070733064","https://openalex.org/W1551731376","https://openalex.org/W1978424725","https://openalex.org/W2143351006","https://openalex.org/W2257661525"],"abstract_inverted_index":null,"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
