{"id":"https://openalex.org/W2125786482","doi":"https://doi.org/10.1007/978-3-642-02008-7_25","title":"Simultaneous Alignment and Folding of Protein Sequences","display_name":"Simultaneous Alignment and Folding of Protein Sequences","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W2125786482","doi":"https://doi.org/10.1007/978-3-642-02008-7_25","mag":"2125786482"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-02008-7_25","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-02008-7_25","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000881484","display_name":"J\u00e9r\u00f4me Waldisp\u00fchl","orcid":"https://orcid.org/0000-0002-2561-7117"},"institutions":[{"id":"https://openalex.org/I4210110987","display_name":"IIT@MIT","ror":"https://ror.org/01wp8zh54","country_code":"US","type":"facility","lineage":["https://openalex.org/I30771326","https://openalex.org/I4210110987"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"J\u00e9r\u00f4me Waldisp\u00fchl","raw_affiliation_strings":["Computer Science and AI Lab, MIT, Cambridge, USA","Department of Mathematics, MIT, Cambridge, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science and AI Lab, MIT, Cambridge, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Mathematics, MIT, Cambridge, USA","institution_ids":["https://openalex.org/I4210110987"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Charles W. O\u2019Donnell","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Charles W. O\u2019Donnell","raw_affiliation_strings":["Electrical Engineering and Computer Science, MIT, USA"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science, MIT, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103135268","display_name":"Sebastian Will","orcid":"https://orcid.org/0000-0002-2376-9205"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sebastian Will","raw_affiliation_strings":["Institut f\u00fcr Informatik, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Informatik, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000525449","display_name":"Srinivas Devadas","orcid":"https://orcid.org/0000-0001-8253-7714"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Srinivas Devadas","raw_affiliation_strings":["Computer Science and AI Lab, MIT, Cambridge, USA","Electrical Engineering and Computer Science, MIT, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science and AI Lab, MIT, Cambridge, USA","institution_ids":[]},{"raw_affiliation_string":"Electrical Engineering and Computer Science, MIT, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017672883","display_name":"Rolf Backofen","orcid":"https://orcid.org/0000-0001-8231-3323"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rolf Backofen","raw_affiliation_strings":["Institut f\u00fcr Informatik, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Informatik, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044078921","display_name":"Bonnie Berger","orcid":"https://orcid.org/0000-0002-2724-7228"},"institutions":[{"id":"https://openalex.org/I4210110987","display_name":"IIT@MIT","ror":"https://ror.org/01wp8zh54","country_code":"US","type":"facility","lineage":["https://openalex.org/I30771326","https://openalex.org/I4210110987"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bonnie Berger","raw_affiliation_strings":["Computer Science and AI Lab, MIT, Cambridge, USA","Department of Mathematics, MIT, Cambridge, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science and AI Lab, MIT, Cambridge, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Mathematics, MIT, Cambridge, USA","institution_ids":["https://openalex.org/I4210110987"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5000881484"],"corresponding_institution_ids":["https://openalex.org/I4210110987"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.4646,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.67179487,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"339","last_page":"355"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9714000225067139,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8027429580688477},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.5416345000267029},{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.4571284353733063},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3988282382488251},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.09636598825454712},{"id":"https://openalex.org/keywords/electrical-engineering","display_name":"Electrical engineering","score":0.057953715324401855}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8027429580688477},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.5416345000267029},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.4571284353733063},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3988282382488251},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.09636598825454712},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.057953715324401855},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-02008-7_25","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-02008-7_25","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W21816278","https://openalex.org/W194850808","https://openalex.org/W1519266993","https://openalex.org/W1522740115","https://openalex.org/W1815618914","https://openalex.org/W1967538863","https://openalex.org/W1967864248","https://openalex.org/W1975148447","https://openalex.org/W1982500800","https://openalex.org/W1991115149","https://openalex.org/W1996423252","https://openalex.org/W2001583934","https://openalex.org/W2005313213","https://openalex.org/W2018216725","https://openalex.org/W2033339460","https://openalex.org/W2085212975","https://openalex.org/W2087254300","https://openalex.org/W2093615982","https://openalex.org/W2095145214","https://openalex.org/W2097775366","https://openalex.org/W2102017611","https://openalex.org/W2110534451","https://openalex.org/W2114094654","https://openalex.org/W2119571185","https://openalex.org/W2132926880","https://openalex.org/W2133279153","https://openalex.org/W2139348052","https://openalex.org/W2140651796","https://openalex.org/W2141920771","https://openalex.org/W2142116796","https://openalex.org/W2143210482","https://openalex.org/W2144362290","https://openalex.org/W2147526198","https://openalex.org/W2155237411","https://openalex.org/W2160672912","https://openalex.org/W2160718424","https://openalex.org/W2166015573","https://openalex.org/W2166745309","https://openalex.org/W2170157200","https://openalex.org/W2171580926","https://openalex.org/W2803927613"],"related_works":["https://openalex.org/W2260493136","https://openalex.org/W2113188411","https://openalex.org/W4210423528","https://openalex.org/W2976965029","https://openalex.org/W2023600921","https://openalex.org/W2382178265","https://openalex.org/W2055827177","https://openalex.org/W2072666835","https://openalex.org/W4248706500","https://openalex.org/W2939859775"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
