{"id":"https://openalex.org/W2012562810","doi":"https://doi.org/10.1007/978-3-642-02008-7_22","title":"Lifting Prediction to Alignment of RNA Pseudoknots","display_name":"Lifting Prediction to Alignment of RNA Pseudoknots","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W2012562810","doi":"https://doi.org/10.1007/978-3-642-02008-7_22","mag":"2012562810"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-02008-7_22","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-02008-7_22","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030896530","display_name":"Mathias M\u00f6hl","orcid":null},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Mathias M\u00f6hl","raw_affiliation_strings":["Programming Systems Lab, Saarland University, Saarbr\u00fccken, Germany#TAB#"],"affiliations":[{"raw_affiliation_string":"Programming Systems Lab, Saarland University, Saarbr\u00fccken, Germany#TAB#","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103135268","display_name":"Sebastian Will","orcid":"https://orcid.org/0000-0002-2376-9205"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sebastian Will","raw_affiliation_strings":["Bioinformatics, Institute of Computer Science, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany","Bioinformatics, Institute of Computer Science, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany#TAB#"],"affiliations":[{"raw_affiliation_string":"Bioinformatics, Institute of Computer Science, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]},{"raw_affiliation_string":"Bioinformatics, Institute of Computer Science, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany#TAB#","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017672883","display_name":"Rolf Backofen","orcid":"https://orcid.org/0000-0001-8231-3323"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rolf Backofen","raw_affiliation_strings":["Bioinformatics, Institute of Computer Science, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany","Bioinformatics, Institute of Computer Science, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany#TAB#"],"affiliations":[{"raw_affiliation_string":"Bioinformatics, Institute of Computer Science, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]},{"raw_affiliation_string":"Bioinformatics, Institute of Computer Science, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany#TAB#","institution_ids":["https://openalex.org/I161046081"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5030896530"],"corresponding_institution_ids":["https://openalex.org/I91712215"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.3935,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.81787687,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"285","last_page":"301"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pseudoknot","display_name":"Pseudoknot","score":0.9512878060340881},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.6623595952987671},{"id":"https://openalex.org/keywords/dynamic-programming","display_name":"Dynamic programming","score":0.6548181772232056},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6431743502616882},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6203424334526062},{"id":"https://openalex.org/keywords/time-complexity","display_name":"Time complexity","score":0.5947209000587463},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.5785407423973083},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5480525493621826},{"id":"https://openalex.org/keywords/factor","display_name":"Factor (programming language)","score":0.4467398524284363},{"id":"https://openalex.org/keywords/computational-complexity-theory","display_name":"Computational complexity theory","score":0.41406750679016113},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.3923090994358063},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3272780776023865},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.22896650433540344},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.19571083784103394}],"concepts":[{"id":"https://openalex.org/C105130999","wikidata":"https://www.wikidata.org/wiki/Q414976","display_name":"Pseudoknot","level":4,"score":0.9512878060340881},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.6623595952987671},{"id":"https://openalex.org/C37404715","wikidata":"https://www.wikidata.org/wiki/Q380679","display_name":"Dynamic programming","level":2,"score":0.6548181772232056},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6431743502616882},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6203424334526062},{"id":"https://openalex.org/C311688","wikidata":"https://www.wikidata.org/wiki/Q2393193","display_name":"Time complexity","level":2,"score":0.5947209000587463},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.5785407423973083},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5480525493621826},{"id":"https://openalex.org/C2781039887","wikidata":"https://www.wikidata.org/wiki/Q1391724","display_name":"Factor (programming language)","level":2,"score":0.4467398524284363},{"id":"https://openalex.org/C179799912","wikidata":"https://www.wikidata.org/wiki/Q205084","display_name":"Computational complexity theory","level":2,"score":0.41406750679016113},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.3923090994358063},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3272780776023865},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.22896650433540344},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.19571083784103394},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-02008-7_22","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-02008-7_22","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.415.4716","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.415.4716","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.bioinf.uni-freiburg.de/Publications/Moehl:Will:Backofen:PKalign:JCB2010.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1509099686","https://openalex.org/W1511188453","https://openalex.org/W1511408336","https://openalex.org/W1543796220","https://openalex.org/W1591070054","https://openalex.org/W1763957638","https://openalex.org/W1967864248","https://openalex.org/W1974736226","https://openalex.org/W2003062976","https://openalex.org/W2008288996","https://openalex.org/W2013195357","https://openalex.org/W2018216725","https://openalex.org/W2024179280","https://openalex.org/W2025763720","https://openalex.org/W2028574527","https://openalex.org/W2042881722","https://openalex.org/W2074882547","https://openalex.org/W2083479074","https://openalex.org/W2086509077","https://openalex.org/W2102017611","https://openalex.org/W2104141342","https://openalex.org/W2106293441","https://openalex.org/W2109297587","https://openalex.org/W2114094654","https://openalex.org/W2123241418","https://openalex.org/W2133279153","https://openalex.org/W2140302584","https://openalex.org/W2140651796","https://openalex.org/W2144362290","https://openalex.org/W2158381555","https://openalex.org/W2161115392","https://openalex.org/W2170157200","https://openalex.org/W2402294151","https://openalex.org/W2803927613"],"related_works":["https://openalex.org/W1982134706","https://openalex.org/W2585053133","https://openalex.org/W1763957638","https://openalex.org/W1482324242","https://openalex.org/W1837794086","https://openalex.org/W2051969447","https://openalex.org/W2059810773","https://openalex.org/W2111937814","https://openalex.org/W1608334680","https://openalex.org/W2119732072"],"abstract_inverted_index":null,"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
