{"id":"https://openalex.org/W1541068407","doi":"https://doi.org/10.1007/978-3-642-02008-7_15","title":"Incorporating Nucleosomes into Thermodynamic Models of Transcription Regulation","display_name":"Incorporating Nucleosomes into Thermodynamic Models of Transcription Regulation","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W1541068407","doi":"https://doi.org/10.1007/978-3-642-02008-7_15","mag":"1541068407"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-02008-7_15","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-02008-7_15","pdf_url":"https://link.springer.com/content/pdf/10.1007/978-3-642-02008-7_15.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://link.springer.com/content/pdf/10.1007/978-3-642-02008-7_15.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084686743","display_name":"Tali Raveh-Sadka","orcid":null},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Tali Raveh-Sadka","raw_affiliation_strings":["Computer Science and Applied Mathematics Department, Weizmann Institute of Science, Rehovot, 76100, Israel","Computer Science and Applied Mathematics Department, Weizmann Institute of Science, Rehovot, Israel 76100"],"affiliations":[{"raw_affiliation_string":"Computer Science and Applied Mathematics Department, Weizmann Institute of Science, Rehovot, 76100, Israel","institution_ids":["https://openalex.org/I53964585"]},{"raw_affiliation_string":"Computer Science and Applied Mathematics Department, Weizmann Institute of Science, Rehovot, Israel 76100","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036183428","display_name":"Michal Levo","orcid":"https://orcid.org/0000-0002-6647-8221"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Michal Levo","raw_affiliation_strings":["Computer Science and Applied Mathematics Department, Weizmann Institute of Science, Rehovot, 76100, Israel","Computer Science and Applied Mathematics Department, Weizmann Institute of Science, Rehovot, Israel 76100"],"affiliations":[{"raw_affiliation_string":"Computer Science and Applied Mathematics Department, Weizmann Institute of Science, Rehovot, 76100, Israel","institution_ids":["https://openalex.org/I53964585"]},{"raw_affiliation_string":"Computer Science and Applied Mathematics Department, Weizmann Institute of Science, Rehovot, Israel 76100","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012450539","display_name":"Eran Segal","orcid":"https://orcid.org/0000-0002-6859-1164"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Eran Segal","raw_affiliation_strings":["Computer Science and Applied Mathematics Department, Weizmann Institute of Science, Rehovot, 76100, Israel","Computer Science and Applied Mathematics Department, Weizmann Institute of Science, Rehovot, Israel 76100"],"affiliations":[{"raw_affiliation_string":"Computer Science and Applied Mathematics Department, Weizmann Institute of Science, Rehovot, 76100, Israel","institution_ids":["https://openalex.org/I53964585"]},{"raw_affiliation_string":"Computer Science and Applied Mathematics Department, Weizmann Institute of Science, Rehovot, Israel 76100","institution_ids":["https://openalex.org/I53964585"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5084686743"],"corresponding_institution_ids":["https://openalex.org/I53964585"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.9276,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.75407891,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"217","last_page":"217"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nucleosome","display_name":"Nucleosome","score":0.8922879695892334},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.7506051063537598},{"id":"https://openalex.org/keywords/cooperativity","display_name":"Cooperativity","score":0.5852550864219666},{"id":"https://openalex.org/keywords/transcription","display_name":"Transcription (linguistics)","score":0.5661040544509888},{"id":"https://openalex.org/keywords/response-element","display_name":"Response element","score":0.510097324848175},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.49363768100738525},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.4533889889717102},{"id":"https://openalex.org/keywords/transcriptional-regulation","display_name":"Transcriptional regulation","score":0.4257064163684845},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.42543739080429077},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4119543135166168},{"id":"https://openalex.org/keywords/histone","display_name":"Histone","score":0.38564983010292053},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.36280250549316406},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.34765779972076416},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2710428833961487},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.24390369653701782}],"concepts":[{"id":"https://openalex.org/C84772758","wikidata":"https://www.wikidata.org/wiki/Q271794","display_name":"Nucleosome","level":4,"score":0.8922879695892334},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.7506051063537598},{"id":"https://openalex.org/C166014724","wikidata":"https://www.wikidata.org/wiki/Q337217","display_name":"Cooperativity","level":2,"score":0.5852550864219666},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.5661040544509888},{"id":"https://openalex.org/C132376346","wikidata":"https://www.wikidata.org/wiki/Q7315962","display_name":"Response element","level":5,"score":0.510097324848175},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.49363768100738525},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.4533889889717102},{"id":"https://openalex.org/C27153228","wikidata":"https://www.wikidata.org/wiki/Q3787274","display_name":"Transcriptional regulation","level":4,"score":0.4257064163684845},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.42543739080429077},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4119543135166168},{"id":"https://openalex.org/C64927066","wikidata":"https://www.wikidata.org/wiki/Q36293","display_name":"Histone","level":3,"score":0.38564983010292053},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.36280250549316406},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.34765779972076416},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2710428833961487},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.24390369653701782},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-02008-7_15","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-02008-7_15","pdf_url":"https://link.springer.com/content/pdf/10.1007/978-3-642-02008-7_15.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":{"id":"doi:10.1007/978-3-642-02008-7_15","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-02008-7_15","pdf_url":"https://link.springer.com/content/pdf/10.1007/978-3-642-02008-7_15.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1541068407.pdf","grobid_xml":"https://content.openalex.org/works/W1541068407.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W197844582","https://openalex.org/W1564217760","https://openalex.org/W1593308984","https://openalex.org/W1644724366","https://openalex.org/W1671879096","https://openalex.org/W1972087187","https://openalex.org/W1980253661","https://openalex.org/W1982669711","https://openalex.org/W2009418361","https://openalex.org/W2013449615","https://openalex.org/W2013571070","https://openalex.org/W2019136439","https://openalex.org/W2019469783","https://openalex.org/W2026882865","https://openalex.org/W2029521343","https://openalex.org/W2029873987","https://openalex.org/W2032619610","https://openalex.org/W2034892963","https://openalex.org/W2038282326","https://openalex.org/W2043009382","https://openalex.org/W2046355391","https://openalex.org/W2050298575","https://openalex.org/W2061111901","https://openalex.org/W2070229734","https://openalex.org/W2080139629","https://openalex.org/W2083052219","https://openalex.org/W2086605270","https://openalex.org/W2087177706","https://openalex.org/W2099061740","https://openalex.org/W2110312780","https://openalex.org/W2114803986","https://openalex.org/W2115219137","https://openalex.org/W2115950725","https://openalex.org/W2118628540","https://openalex.org/W2129314778","https://openalex.org/W2129795133","https://openalex.org/W2132866322","https://openalex.org/W2135363003","https://openalex.org/W2143855992","https://openalex.org/W2144347639","https://openalex.org/W2147734340","https://openalex.org/W2152406248","https://openalex.org/W2155717510","https://openalex.org/W2158870773","https://openalex.org/W2165228646","https://openalex.org/W2170033314","https://openalex.org/W2171280873","https://openalex.org/W2171327609","https://openalex.org/W2764412459"],"related_works":["https://openalex.org/W2043252151","https://openalex.org/W2497395447","https://openalex.org/W2551597078","https://openalex.org/W2067240889","https://openalex.org/W2113253885","https://openalex.org/W2020842184","https://openalex.org/W1979616193","https://openalex.org/W2082280880","https://openalex.org/W2148010262","https://openalex.org/W2041564487"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
