{"id":"https://openalex.org/W2020711986","doi":"https://doi.org/10.1007/978-3-642-02008-7_10","title":"An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations","display_name":"An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W2020711986","doi":"https://doi.org/10.1007/978-3-642-02008-7_10","mag":"2020711986"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-02008-7_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-02008-7_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028188095","display_name":"Arvind Ramanathan","orcid":"https://orcid.org/0000-0002-1622-5488"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Arvind Ramanathan","raw_affiliation_strings":["Lane Center for Computational Biology, Carnegie Mellon University, USA"],"affiliations":[{"raw_affiliation_string":"Lane Center for Computational Biology, Carnegie Mellon University, USA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053107527","display_name":"Pratul K. Agarwal","orcid":"https://orcid.org/0000-0002-3848-9492"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pratul K. Agarwal","raw_affiliation_strings":["Computational Biology Institute, and Computer Science and Mathematics Division, Oak Ridge National Laboratory, USA"],"affiliations":[{"raw_affiliation_string":"Computational Biology Institute, and Computer Science and Mathematics Division, Oak Ridge National Laboratory, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022450476","display_name":"Maria G. Kurnikova","orcid":"https://orcid.org/0000-0002-8010-8374"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maria Kurnikova","raw_affiliation_strings":["Chemistry Department, Carnegie Mellon University, USA"],"affiliations":[{"raw_affiliation_string":"Chemistry Department, Carnegie Mellon University, USA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042353780","display_name":"Christopher J. Langmead","orcid":"https://orcid.org/0000-0001-7521-6736"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher J. Langmead","raw_affiliation_strings":["Computer Science Department, School of Computer Science, Carnegie Mellon University, USA","Lane Center for Computational Biology, Carnegie Mellon University, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, School of Computer Science, Carnegie Mellon University, USA","institution_ids":["https://openalex.org/I74973139"]},{"raw_affiliation_string":"Lane Center for Computational Biology, Carnegie Mellon University, USA","institution_ids":["https://openalex.org/I74973139"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5028188095"],"corresponding_institution_ids":["https://openalex.org/I74973139"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.3914,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.81775932,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"138","last_page":"154"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11124","display_name":"Protein purification and stability","score":0.9502000212669373,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10260","display_name":"Software Engineering Research","score":0.9447000026702881,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/barnase","display_name":"Barnase","score":0.7400015592575073},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6624250411987305},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5828055143356323},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.5595518946647644},{"id":"https://openalex.org/keywords/protein-dynamics","display_name":"Protein dynamics","score":0.5140265226364136},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.507037878036499},{"id":"https://openalex.org/keywords/collective-behavior","display_name":"Collective behavior","score":0.4352593421936035},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37956589460372925},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.37193405628204346},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.3432101607322693},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.19292974472045898},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.14728689193725586},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11695507168769836},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.07749912142753601}],"concepts":[{"id":"https://openalex.org/C2776559745","wikidata":"https://www.wikidata.org/wiki/Q4078377","display_name":"Barnase","level":5,"score":0.7400015592575073},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6624250411987305},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5828055143356323},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.5595518946647644},{"id":"https://openalex.org/C2775981520","wikidata":"https://www.wikidata.org/wiki/Q17156992","display_name":"Protein dynamics","level":3,"score":0.5140265226364136},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.507037878036499},{"id":"https://openalex.org/C100339178","wikidata":"https://www.wikidata.org/wiki/Q2548752","display_name":"Collective behavior","level":2,"score":0.4352593421936035},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37956589460372925},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.37193405628204346},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.3432101607322693},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.19292974472045898},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.14728689193725586},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11695507168769836},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.07749912142753601},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C2778976237","wikidata":"https://www.wikidata.org/wiki/Q422523","display_name":"Ribonuclease","level":4,"score":0.0},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-02008-7_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-02008-7_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":56,"referenced_works":["https://openalex.org/W255996521","https://openalex.org/W409604127","https://openalex.org/W610636697","https://openalex.org/W1495469490","https://openalex.org/W1498328976","https://openalex.org/W1976272154","https://openalex.org/W1977556410","https://openalex.org/W1978033776","https://openalex.org/W1986307464","https://openalex.org/W1986915985","https://openalex.org/W1988050069","https://openalex.org/W1990387274","https://openalex.org/W1995424235","https://openalex.org/W1998412941","https://openalex.org/W2002948689","https://openalex.org/W2009123297","https://openalex.org/W2017212707","https://openalex.org/W2019004327","https://openalex.org/W2024165284","https://openalex.org/W2027559251","https://openalex.org/W2031049553","https://openalex.org/W2033350048","https://openalex.org/W2037271374","https://openalex.org/W2037360998","https://openalex.org/W2043221928","https://openalex.org/W2044877050","https://openalex.org/W2045001436","https://openalex.org/W2047953384","https://openalex.org/W2061370212","https://openalex.org/W2066961392","https://openalex.org/W2067763399","https://openalex.org/W2086037463","https://openalex.org/W2091707670","https://openalex.org/W2093221728","https://openalex.org/W2093547815","https://openalex.org/W2105254477","https://openalex.org/W2108138101","https://openalex.org/W2111385318","https://openalex.org/W2113994268","https://openalex.org/W2126552798","https://openalex.org/W2130479394","https://openalex.org/W2135983089","https://openalex.org/W2139036153","https://openalex.org/W2146278756","https://openalex.org/W2146598193","https://openalex.org/W2146967264","https://openalex.org/W2150981663","https://openalex.org/W2153228625","https://openalex.org/W2157268641","https://openalex.org/W2163915395","https://openalex.org/W2198505757","https://openalex.org/W2490308495","https://openalex.org/W3099514962","https://openalex.org/W3149078497","https://openalex.org/W4229749918","https://openalex.org/W4292023222"],"related_works":["https://openalex.org/W4211175726","https://openalex.org/W2413365199","https://openalex.org/W1964551565","https://openalex.org/W2045523106","https://openalex.org/W2098575496","https://openalex.org/W2015140049","https://openalex.org/W2772226369","https://openalex.org/W2945562222","https://openalex.org/W2341378690","https://openalex.org/W2019658525"],"abstract_inverted_index":null,"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
