{"id":"https://openalex.org/W1530804984","doi":"https://doi.org/10.1007/978-3-642-01551-9_18","title":"Prediction of Contiguous Regions in the Amniote Ancestral Genome","display_name":"Prediction of Contiguous Regions in the Amniote Ancestral Genome","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W1530804984","doi":"https://doi.org/10.1007/978-3-642-01551-9_18","mag":"1530804984"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-01551-9_18","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-01551-9_18","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hal.science/hal-00368187","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004463624","display_name":"A\u00efda Ouangraoua","orcid":"https://orcid.org/0000-0002-2040-4948"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"A\u00efda Ouangraoua","raw_affiliation_strings":["Department of Mathematics, Simon Fraser University, Burnaby (BC), Canada"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Simon Fraser University, Burnaby (BC), Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070115867","display_name":"Fr\u00e9d\u00e9ric Boyer","orcid":"https://orcid.org/0000-0003-0021-9590"},"institutions":[{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I3020098449","display_name":"CEA Grenoble","ror":"https://ror.org/02mg6n827","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I3020098449"]},{"id":"https://openalex.org/I4210144381","display_name":"Institut de Recherches en Technologies et Sciences pour le Vivant","ror":"https://ror.org/039javj55","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210144381"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fr\u00e9d\u00e9ric Boyer","raw_affiliation_strings":["Institut de Recherches en Technologies et Sciences pour le Vivant; Laboratoire Biologie, Informatique et Math\u00e9matiques, CEA Grenoble, F-38000, Grenoble, France","Laboratoire Biologie, Informatique et Math\u00e9matiques, CEA Grenoble, F-38000, Grenoble, France","Institut de Recherches en Technologies et Sciences pour le Vivant"],"affiliations":[{"raw_affiliation_string":"Institut de Recherches en Technologies et Sciences pour le Vivant; Laboratoire Biologie, Informatique et Math\u00e9matiques, CEA Grenoble, F-38000, Grenoble, France","institution_ids":["https://openalex.org/I3020098449","https://openalex.org/I2738703131","https://openalex.org/I4210144381"]},{"raw_affiliation_string":"Laboratoire Biologie, Informatique et Math\u00e9matiques, CEA Grenoble, F-38000, Grenoble, France","institution_ids":["https://openalex.org/I3020098449","https://openalex.org/I2738703131"]},{"raw_affiliation_string":"Institut de Recherches en Technologies et Sciences pour le Vivant","institution_ids":["https://openalex.org/I4210144381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050657151","display_name":"Andrew McPherson","orcid":"https://orcid.org/0000-0002-5654-5101"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Andrew McPherson","raw_affiliation_strings":["Department of Mathematics, Simon Fraser University, Burnaby (BC), Canada"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Simon Fraser University, Burnaby (BC), Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026210731","display_name":"\u00c9ric Tannier","orcid":"https://orcid.org/0000-0002-3681-7536"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I203339264","display_name":"Universit\u00e9 de Lyon","ror":"https://ror.org/01rk35k63","country_code":"FR","type":"education","lineage":["https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210116847","display_name":"Environnement, ville, soci\u00e9t\u00e9","ror":"https://ror.org/0256r1e04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I188626449","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I205703379","https://openalex.org/I3019848993","https://openalex.org/I4210116847","https://openalex.org/I4210161214","https://openalex.org/I4210166914","https://openalex.org/I4405259976","https://openalex.org/I48430043","https://openalex.org/I874609350"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"\u00c9ric Tannier","raw_affiliation_strings":["Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, INRIA Rh\u00f4ne-Alpes; Universit\u00e9 de Lyon; Universit\u00e9 Lyon 1; CNRS, UMR5558, F-69622, Villeurbanne, France","CNRS, UMR5558, F-69622, Villeurbanne, France","Universit\u00e9 de Lyon","Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, INRIA Rh\u00f4ne-Alpes","Universit\u00e9 Lyon 1"],"affiliations":[{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, INRIA Rh\u00f4ne-Alpes; Universit\u00e9 de Lyon; Universit\u00e9 Lyon 1; CNRS, UMR5558, F-69622, Villeurbanne, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"CNRS, UMR5558, F-69622, Villeurbanne, France","institution_ids":["https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Universit\u00e9 de Lyon","institution_ids":["https://openalex.org/I4210116847","https://openalex.org/I203339264"]},{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, INRIA Rh\u00f4ne-Alpes","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I1326498283"]},{"raw_affiliation_string":"Universit\u00e9 Lyon 1","institution_ids":["https://openalex.org/I100532134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063811688","display_name":"C\u00e9dric Chauve","orcid":"https://orcid.org/0000-0001-9837-1878"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Cedric Chauve","raw_affiliation_strings":["Department of Mathematics, Simon Fraser University, Burnaby (BC), Canada"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Simon Fraser University, Burnaby (BC), Canada","institution_ids":["https://openalex.org/I18014758"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5004463624"],"corresponding_institution_ids":["https://openalex.org/I18014758"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":10.1092,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.9839295,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"173","last_page":"185"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/amniote","display_name":"Amniote","score":0.9930435419082642},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.8518306612968445},{"id":"https://openalex.org/keywords/lineage","display_name":"Lineage (genetic)","score":0.6478772163391113},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6422116160392761},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.5960731506347656},{"id":"https://openalex.org/keywords/extant-taxon","display_name":"Extant taxon","score":0.48677706718444824},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32477807998657227},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2876589894294739},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2633786201477051},{"id":"https://openalex.org/keywords/vertebrate","display_name":"Vertebrate","score":0.08931088447570801}],"concepts":[{"id":"https://openalex.org/C2781011139","wikidata":"https://www.wikidata.org/wiki/Q181537","display_name":"Amniote","level":4,"score":0.9930435419082642},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.8518306612968445},{"id":"https://openalex.org/C2776817793","wikidata":"https://www.wikidata.org/wiki/Q6553369","display_name":"Lineage (genetic)","level":3,"score":0.6478772163391113},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6422116160392761},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.5960731506347656},{"id":"https://openalex.org/C178300618","wikidata":"https://www.wikidata.org/wiki/Q1898509","display_name":"Extant taxon","level":2,"score":0.48677706718444824},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32477807998657227},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2876589894294739},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2633786201477051},{"id":"https://openalex.org/C2778961482","wikidata":"https://www.wikidata.org/wiki/Q25241","display_name":"Vertebrate","level":3,"score":0.08931088447570801}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1007/978-3-642-01551-9_18","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-01551-9_18","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.156.9253","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.156.9253","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cecm.sfu.ca/~cchauve/Publications/ISBRA09.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.595.61","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.595.61","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://hal.archives-ouvertes.fr/docs/00/36/81/87/PDF/ISBRA09.pdf","raw_type":"text"},{"id":"pmh:oai:HAL:hal-00368187v1","is_oa":true,"landing_page_url":"https://hal.science/hal-00368187","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISBRA 2009, 5th International Symposium on Bioinformatics Research and Applications,, May 2009, Fort Lauderdale, Florida, United States. ⟨10.1007/978-3-642-01551-9_18⟩","raw_type":"Conference papers"},{"id":"pmh:oai:HAL:hal-00428360v1","is_oa":false,"landing_page_url":"https://hal.archives-ouvertes.fr/hal-00428360","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"incollection","raw_type":"\\ninfo:eu-repo/semantics/article\\n"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-00368187v1","is_oa":true,"landing_page_url":"https://hal.science/hal-00368187","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISBRA 2009, 5th International Symposium on Bioinformatics Research and Applications,, May 2009, Fort Lauderdale, Florida, United States. ⟨10.1007/978-3-642-01551-9_18⟩","raw_type":"Conference papers"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1483191758","https://openalex.org/W1499048964","https://openalex.org/W1517399014","https://openalex.org/W1971926406","https://openalex.org/W1976450663","https://openalex.org/W1976829367","https://openalex.org/W1980977569","https://openalex.org/W1985597130","https://openalex.org/W1990725287","https://openalex.org/W2024491681","https://openalex.org/W2038035134","https://openalex.org/W2040322208","https://openalex.org/W2059921779","https://openalex.org/W2064912476","https://openalex.org/W2081933515","https://openalex.org/W2087304615","https://openalex.org/W2090619251","https://openalex.org/W2095669835","https://openalex.org/W2097710447","https://openalex.org/W2116905253","https://openalex.org/W2128440410","https://openalex.org/W2130640131","https://openalex.org/W2131148812","https://openalex.org/W2134824589","https://openalex.org/W3138241566","https://openalex.org/W4210241463"],"related_works":["https://openalex.org/W3037740244","https://openalex.org/W1554470851","https://openalex.org/W2920061786","https://openalex.org/W4381279187","https://openalex.org/W2654359665","https://openalex.org/W2625912121","https://openalex.org/W4389300316","https://openalex.org/W2621246910","https://openalex.org/W4379055781","https://openalex.org/W2136345656"],"abstract_inverted_index":null,"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}