{"id":"https://openalex.org/W1588644033","doi":"https://doi.org/10.1007/978-3-642-00727-9_4","title":"A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants","display_name":"A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W1588644033","doi":"https://doi.org/10.1007/978-3-642-00727-9_4","mag":"1588644033"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-00727-9_4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-00727-9_4","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014978419","display_name":"Jianjiong Gao","orcid":"https://orcid.org/0000-0002-5739-1781"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Jianjiong Gao","raw_affiliation_strings":["C.S. Bond Life Sciences Center, USA","Department of Computer Science, USA"],"affiliations":[{"raw_affiliation_string":"C.S. Bond Life Sciences Center, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108532045","display_name":"Ganesh Kumar Agrawal","orcid":null},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ganesh Kumar Agrawal","raw_affiliation_strings":["C.S. Bond Life Sciences Center, USA","Department of Biochemistry, University of Missouri, Columbia, Missouri, 65211, USA"],"affiliations":[{"raw_affiliation_string":"C.S. Bond Life Sciences Center, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Biochemistry, University of Missouri, Columbia, Missouri, 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033951572","display_name":"Jay J. Thelen","orcid":"https://orcid.org/0000-0001-5995-1562"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jay J. Thelen","raw_affiliation_strings":["C.S. Bond Life Sciences Center, USA","Department of Biochemistry, University of Missouri, Columbia, Missouri, 65211, USA"],"affiliations":[{"raw_affiliation_string":"C.S. Bond Life Sciences Center, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Biochemistry, University of Missouri, Columbia, Missouri, 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044038055","display_name":"Zoran Obradovi\u0107","orcid":"https://orcid.org/0000-0002-2051-0142"},"institutions":[{"id":"https://openalex.org/I84392919","display_name":"Temple University","ror":"https://ror.org/00kx1jb78","country_code":"US","type":"education","lineage":["https://openalex.org/I84392919"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zoran Obradovic","raw_affiliation_strings":["Center for Information Science and Technology, Temple University, Philadelphia, PA 19122, USA"],"affiliations":[{"raw_affiliation_string":"Center for Information Science and Technology, Temple University, Philadelphia, PA 19122, USA","institution_ids":["https://openalex.org/I84392919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017746551","display_name":"A. Keith Dunker","orcid":"https://orcid.org/0000-0002-0744-5243"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Keith Dunker","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics, Indiana University Schools of Medicine and Informatics, Indianapolis, IN 46202, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, Indiana University Schools of Medicine and Informatics, Indianapolis, IN 46202, USA","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068732609","display_name":"Dong Xu","orcid":"https://orcid.org/0000-0002-0583-240X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dong Xu","raw_affiliation_strings":["C.S. Bond Life Sciences Center, USA","Department of Computer Science, USA"],"affiliations":[{"raw_affiliation_string":"C.S. Bond Life Sciences Center, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5014978419"],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":5.1094,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.956985,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"18","last_page":"29"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.782940685749054},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6471236348152161},{"id":"https://openalex.org/keywords/protein-phosphorylation","display_name":"Protein phosphorylation","score":0.5998207926750183},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.5091716647148132},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.46604740619659424},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4560030698776245},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4437122344970703},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42228779196739197},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36675429344177246},{"id":"https://openalex.org/keywords/protein-kinase-a","display_name":"Protein kinase A","score":0.3598824739456177},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2548460364341736},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.23792749643325806}],"concepts":[{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.782940685749054},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6471236348152161},{"id":"https://openalex.org/C87325107","wikidata":"https://www.wikidata.org/wiki/Q7251493","display_name":"Protein phosphorylation","level":4,"score":0.5998207926750183},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.5091716647148132},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.46604740619659424},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4560030698776245},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4437122344970703},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42228779196739197},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36675429344177246},{"id":"https://openalex.org/C97029542","wikidata":"https://www.wikidata.org/wiki/Q281417","display_name":"Protein kinase A","level":3,"score":0.3598824739456177},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2548460364341736},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.23792749643325806}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-00727-9_4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-00727-9_4","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.220.9028","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.220.9028","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.dabi.temple.edu/%7Ezoran/papers/gao09.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1504478980","https://openalex.org/W1570204439","https://openalex.org/W1991906934","https://openalex.org/W1995989434","https://openalex.org/W2035980266","https://openalex.org/W2048666997","https://openalex.org/W2051147053","https://openalex.org/W2071555141","https://openalex.org/W2078802348","https://openalex.org/W2085037886","https://openalex.org/W2090806203","https://openalex.org/W2098963498","https://openalex.org/W2099682053","https://openalex.org/W2102025585","https://openalex.org/W2104244040","https://openalex.org/W2104726963","https://openalex.org/W2114508508","https://openalex.org/W2117553655","https://openalex.org/W2119914602","https://openalex.org/W2128413613","https://openalex.org/W2134129243","https://openalex.org/W2143210482","https://openalex.org/W2155239883","https://openalex.org/W2161052703","https://openalex.org/W2162172965","https://openalex.org/W2164016662","https://openalex.org/W2167350014","https://openalex.org/W2167865654","https://openalex.org/W2916483810","https://openalex.org/W6632602330"],"related_works":["https://openalex.org/W2352214813","https://openalex.org/W2491608603","https://openalex.org/W941583161","https://openalex.org/W2505862120","https://openalex.org/W4223412920","https://openalex.org/W1973530967","https://openalex.org/W1557660156","https://openalex.org/W2411534571","https://openalex.org/W2387788458","https://openalex.org/W175922642"],"abstract_inverted_index":null,"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
