{"id":"https://openalex.org/W185514597","doi":"https://doi.org/10.1007/978-3-642-00727-9_30","title":"A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments","display_name":"A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W185514597","doi":"https://doi.org/10.1007/978-3-642-00727-9_30","mag":"185514597"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-00727-9_30","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-00727-9_30","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023990588","display_name":"Hatice G\u00fcl\u00e7in \u00d6zer","orcid":"https://orcid.org/0000-0002-8315-8051"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hatice Gulcin Ozer","raw_affiliation_strings":["Department of Biomedical Informatics, The Ohio State University, USA","The Ohio State University Comprehensive Cancer Center Biomedical Informatics Shared Resource, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, The Ohio State University, USA","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"The Ohio State University Comprehensive Cancer Center Biomedical Informatics Shared Resource, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008376823","display_name":"Doruk Bozda\u011f","orcid":null},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Doruk Bozda\u011f","raw_affiliation_strings":["Department of Biomedical Informatics, The Ohio State University, USA","Department of Electrical & Computer Engineering, The Ohio State University, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, The Ohio State University, USA","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"Department of Electrical & Computer Engineering, The Ohio State University, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062747313","display_name":"Terry Camerlengo","orcid":null},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Terry Camerlengo","raw_affiliation_strings":["Department of Biomedical Informatics, The Ohio State University, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, The Ohio State University, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062929535","display_name":"Jiejun Wu","orcid":"https://orcid.org/0000-0003-0132-8211"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiejun Wu","raw_affiliation_strings":["Department of Molecular Virology, Immunology, The Ohio State University, 43210, Columbus, OH, USA","Department of Molecular Virology, Immunology, The Ohio State University, Columbus, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Virology, Immunology, The Ohio State University, 43210, Columbus, OH, USA","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"Department of Molecular Virology, Immunology, The Ohio State University, Columbus, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060510549","display_name":"Yi\u2010Wen Huang","orcid":"https://orcid.org/0000-0001-9220-8770"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yi-Wen Huang","raw_affiliation_strings":["Department of Molecular Virology, Immunology, The Ohio State University, 43210, Columbus, OH, USA","Department of Molecular Virology, Immunology, The Ohio State University, Columbus, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Virology, Immunology, The Ohio State University, 43210, Columbus, OH, USA","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"Department of Molecular Virology, Immunology, The Ohio State University, Columbus, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008291713","display_name":"Tim Hartley","orcid":null},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tim Hartley","raw_affiliation_strings":["Department of Biomedical Informatics, The Ohio State University, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, The Ohio State University, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023251641","display_name":"Jeffrey D. Parvin","orcid":"https://orcid.org/0000-0001-5616-1928"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey D. Parvin","raw_affiliation_strings":["Department of Biomedical Informatics, The Ohio State University, USA","The Ohio State University Comprehensive Cancer Center Biomedical Informatics Shared Resource, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, The Ohio State University, USA","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"The Ohio State University Comprehensive Cancer Center Biomedical Informatics Shared Resource, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110259719","display_name":"Tim H-M. Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tim Huang","raw_affiliation_strings":["Department of Molecular Virology, Immunology, The Ohio State University, 43210, Columbus, OH, USA","Department of Molecular Virology, Immunology, The Ohio State University, Columbus, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Virology, Immunology, The Ohio State University, 43210, Columbus, OH, USA","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"Department of Molecular Virology, Immunology, The Ohio State University, Columbus, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026046737","display_name":"\u00dcmit V. \u00c7ataly\u00fcrek","orcid":"https://orcid.org/0000-0002-5625-3758"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Umit V. Catalyurek","raw_affiliation_strings":["Department of Biomedical Informatics, The Ohio State University, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, The Ohio State University, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057366605","display_name":"Kun Huang","orcid":"https://orcid.org/0000-0002-8530-370X"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kun Huang","raw_affiliation_strings":["Department of Biomedical Informatics, The Ohio State University, USA","The Ohio State University Comprehensive Cancer Center Biomedical Informatics Shared Resource, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, The Ohio State University, USA","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"The Ohio State University Comprehensive Cancer Center Biomedical Informatics Shared Resource, USA","institution_ids":["https://openalex.org/I52357470"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5023990588"],"corresponding_institution_ids":["https://openalex.org/I52357470"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.4638,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.63482646,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"320","last_page":"330"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8222020864486694},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7300848960876465},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5660946369171143},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5182268619537354},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.5148652791976929},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5107874870300293},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.501577615737915},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4477071762084961},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33082032203674316},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.32737553119659424},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.18854624032974243},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15854763984680176},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13343825936317444},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13028669357299805},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.09314340353012085}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8222020864486694},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7300848960876465},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5660946369171143},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5182268619537354},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.5148652791976929},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5107874870300293},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.501577615737915},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4477071762084961},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33082032203674316},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.32737553119659424},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.18854624032974243},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15854763984680176},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13343825936317444},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13028669357299805},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.09314340353012085},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-00727-9_30","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-00727-9_30","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W2056116605","https://openalex.org/W2057298723","https://openalex.org/W2059699217","https://openalex.org/W2072193858","https://openalex.org/W2088435101","https://openalex.org/W2097862362","https://openalex.org/W2118254007","https://openalex.org/W2129795133","https://openalex.org/W2141407136"],"related_works":["https://openalex.org/W2591697403","https://openalex.org/W1981780420","https://openalex.org/W2944728705","https://openalex.org/W2182707996","https://openalex.org/W2904022177","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W2359348847","https://openalex.org/W3011538607","https://openalex.org/W4294432981"],"abstract_inverted_index":null,"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2026-01-15T23:16:33.117629","created_date":"2025-10-10T00:00:00"}
