{"id":"https://openalex.org/W1538582189","doi":"https://doi.org/10.1007/978-3-642-00219-9_46","title":"Visualizing the Results of Metabolic Pathway Queries","display_name":"Visualizing the Results of Metabolic Pathway Queries","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W1538582189","doi":"https://doi.org/10.1007/978-3-642-00219-9_46","mag":"1538582189"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-00219-9_46","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-00219-9_46","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-00219-9_46.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-00219-9_46.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058890056","display_name":"Allison P. Heath","orcid":"https://orcid.org/0000-0002-2583-9668"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Allison P. Heath","raw_affiliation_strings":["Department of Computer Science, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038858646","display_name":"George N. Bennett","orcid":"https://orcid.org/0000-0003-1408-8915"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"George N. Bennett","raw_affiliation_strings":["Department of Biochemistry and Cell Biology, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Cell Biology, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067205988","display_name":"Lydia E. Kavraki","orcid":"https://orcid.org/0000-0003-0699-8038"},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]},{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lydia E. Kavraki","raw_affiliation_strings":["Department of Bioengineering, Rice University, Houston, USA","Department of Computer Science, USA","Structural and Computational Biology and Molecular Biophysics, Baylor College of Medicine, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Rice University, Houston, USA","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"Department of Computer Science, USA","institution_ids":[]},{"raw_affiliation_string":"Structural and Computational Biology and Molecular Biophysics, Baylor College of Medicine, Houston, USA","institution_ids":["https://openalex.org/I181547552"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5058890056"],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11359606,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"441","last_page":"442"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9692000150680542,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7473893165588379},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.6233999133110046},{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.6209617257118225},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5328559875488281},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.46856358647346497},{"id":"https://openalex.org/keywords/metabolic-regulation","display_name":"Metabolic regulation","score":0.45632293820381165},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.4408890902996063},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3920547068119049},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3870704472064972},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.18533748388290405},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18365293741226196},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11425861716270447},{"id":"https://openalex.org/keywords/metabolism","display_name":"Metabolism","score":0.08786863088607788}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7473893165588379},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.6233999133110046},{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.6209617257118225},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5328559875488281},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.46856358647346497},{"id":"https://openalex.org/C2991986269","wikidata":"https://www.wikidata.org/wiki/Q1057","display_name":"Metabolic regulation","level":3,"score":0.45632293820381165},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.4408890902996063},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3920547068119049},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3870704472064972},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.18533748388290405},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18365293741226196},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11425861716270447},{"id":"https://openalex.org/C62231903","wikidata":"https://www.wikidata.org/wiki/Q1057","display_name":"Metabolism","level":2,"score":0.08786863088607788},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-00219-9_46","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-00219-9_46","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-00219-9_46.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:gdea.informatik.uni-koeln.de:934","is_oa":false,"landing_page_url":"http://gdea.informatik.uni-koeln.de/934/","pdf_url":null,"source":{"id":"https://openalex.org/S4377196197","display_name":"gdea - Graph Drawing E-print Archive (GDEA)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"}],"best_oa_location":{"id":"doi:10.1007/978-3-642-00219-9_46","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-00219-9_46","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-00219-9_46.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1538582189.pdf","grobid_xml":"https://content.openalex.org/works/W1538582189.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W2108036176","https://openalex.org/W2110365947","https://openalex.org/W2119485467","https://openalex.org/W2131735363","https://openalex.org/W2168867570","https://openalex.org/W2171617577","https://openalex.org/W4240948429"],"related_works":["https://openalex.org/W1961707331","https://openalex.org/W2341681417","https://openalex.org/W2063475537","https://openalex.org/W2158714033","https://openalex.org/W2012938657","https://openalex.org/W4223538309","https://openalex.org/W2072067873","https://openalex.org/W3035286847","https://openalex.org/W2940249735","https://openalex.org/W4385164381"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-05-03T08:25:01.440150","created_date":"2025-10-10T00:00:00"}
