{"id":"https://openalex.org/W1537348057","doi":"https://doi.org/10.1007/978-3-540-88765-2_3","title":"Stochastic Calculus of Looping Sequences for the Modelling and Simulation of Cellular Pathways","display_name":"Stochastic Calculus of Looping Sequences for the Modelling and Simulation of Cellular Pathways","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W1537348057","doi":"https://doi.org/10.1007/978-3-540-88765-2_3","mag":"1537348057"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-88765-2_3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-88765-2_3","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089634233","display_name":"Roberto Barbuti","orcid":"https://orcid.org/0000-0001-7028-4238"},"institutions":[{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Roberto Barbuti","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 di Pisa, Largo B. Pontecorvo 3, 56127, Pisa, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 di Pisa, Largo B. Pontecorvo 3, 56127, Pisa, Italy","institution_ids":["https://openalex.org/I108290504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111495699","display_name":"Andrea Maggiolo\u2013Schettini","orcid":null},"institutions":[{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea Maggiolo-Schettini","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 di Pisa, Largo B. Pontecorvo 3, 56127, Pisa, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 di Pisa, Largo B. Pontecorvo 3, 56127, Pisa, Italy","institution_ids":["https://openalex.org/I108290504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038730637","display_name":"Paolo Milazzo","orcid":"https://orcid.org/0000-0002-7309-6424"},"institutions":[{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paolo Milazzo","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 di Pisa, Largo B. Pontecorvo 3, 56127, Pisa, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 di Pisa, Largo B. Pontecorvo 3, 56127, Pisa, Italy","institution_ids":["https://openalex.org/I108290504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051509100","display_name":"Paolo Tiberi","orcid":null},"institutions":[{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paolo Tiberi","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 di Pisa, Largo B. Pontecorvo 3, 56127, Pisa, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 di Pisa, Largo B. Pontecorvo 3, 56127, Pisa, Italy","institution_ids":["https://openalex.org/I108290504"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047668180","display_name":"Angelo Troina","orcid":"https://orcid.org/0000-0002-0049-4237"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Angelo Troina","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 di Torino, Corso Svizzera 185, 10149, Torino, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 di Torino, Corso Svizzera 185, 10149, Torino, Italy","institution_ids":["https://openalex.org/I55143463"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":18.603,"has_fulltext":false,"cited_by_count":35,"citation_normalized_percentile":{"value":0.99486578,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"86","last_page":"113"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6654806137084961},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6397274732589722},{"id":"https://openalex.org/keywords/stochastic-modelling","display_name":"Stochastic modelling","score":0.4697706401348114},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4592658281326294},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.44686219096183777},{"id":"https://openalex.org/keywords/operator","display_name":"Operator (biology)","score":0.42991289496421814},{"id":"https://openalex.org/keywords/stochastic-process","display_name":"Stochastic process","score":0.4176506996154785},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3495410084724426},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21088215708732605},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08972638845443726}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6654806137084961},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6397274732589722},{"id":"https://openalex.org/C127491075","wikidata":"https://www.wikidata.org/wiki/Q7617825","display_name":"Stochastic modelling","level":2,"score":0.4697706401348114},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4592658281326294},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.44686219096183777},{"id":"https://openalex.org/C17020691","wikidata":"https://www.wikidata.org/wiki/Q139677","display_name":"Operator (biology)","level":5,"score":0.42991289496421814},{"id":"https://openalex.org/C8272713","wikidata":"https://www.wikidata.org/wiki/Q176737","display_name":"Stochastic process","level":2,"score":0.4176506996154785},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3495410084724426},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21088215708732605},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08972638845443726},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C158448853","wikidata":"https://www.wikidata.org/wiki/Q425218","display_name":"Repressor","level":4,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-540-88765-2_3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-88765-2_3","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:arpi.unipi.it:11568/120655","is_oa":false,"landing_page_url":"http://hdl.handle.net/11568/120655","pdf_url":null,"source":{"id":"https://openalex.org/S4377196265","display_name":"CINECA IRIS Institutial research information system (University of Pisa)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I108290504","host_organization_name":"University of Pisa","host_organization_lineage":["https://openalex.org/I108290504"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:cris.unibo.it:11585/581048","is_oa":false,"landing_page_url":"http://link.springer.com/chapter/10.1007/978-3-540-88765-2_3","pdf_url":null,"source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W291482096","https://openalex.org/W1487906584","https://openalex.org/W1499965417","https://openalex.org/W1535220465","https://openalex.org/W1544529442","https://openalex.org/W1559033975","https://openalex.org/W1572091553","https://openalex.org/W1595516773","https://openalex.org/W1934319200","https://openalex.org/W1975954590","https://openalex.org/W1983350265","https://openalex.org/W1986649132","https://openalex.org/W2007006124","https://openalex.org/W2021089599","https://openalex.org/W2040270674","https://openalex.org/W2056008871","https://openalex.org/W2062584479","https://openalex.org/W2066322491","https://openalex.org/W2106190666","https://openalex.org/W2110796675","https://openalex.org/W2113997157","https://openalex.org/W2114671816","https://openalex.org/W2121360410","https://openalex.org/W2128313698","https://openalex.org/W2138519564","https://openalex.org/W2150261114","https://openalex.org/W2155418451","https://openalex.org/W2162943184","https://openalex.org/W2169193349","https://openalex.org/W2169696772","https://openalex.org/W2284263109","https://openalex.org/W2340390498","https://openalex.org/W2883424192","https://openalex.org/W2913004508","https://openalex.org/W4206542816","https://openalex.org/W4253060067"],"related_works":["https://openalex.org/W1995427843","https://openalex.org/W2042280983","https://openalex.org/W2888652631","https://openalex.org/W2321888438","https://openalex.org/W2369445029","https://openalex.org/W2026456043","https://openalex.org/W4320063126","https://openalex.org/W2417662900","https://openalex.org/W1987284827","https://openalex.org/W1996323220"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2016-06-24T00:00:00"}