{"id":"https://openalex.org/W1543959853","doi":"https://doi.org/10.1007/978-3-540-88436-1_20","title":"TopEVM: Using Co-occurrence and Topology Patterns of Enzymes in Metabolic Networks to Construct Phylogenetic Trees","display_name":"TopEVM: Using Co-occurrence and Topology Patterns of Enzymes in Metabolic Networks to Construct Phylogenetic Trees","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W1543959853","doi":"https://doi.org/10.1007/978-3-540-88436-1_20","mag":"1543959853"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-88436-1_20","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-540-88436-1_20","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-540-88436-1_20.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-540-88436-1_20.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006751916","display_name":"Tingting Zhou","orcid":"https://orcid.org/0000-0002-3899-881X"},"institutions":[{"id":"https://openalex.org/I14243506","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98","country_code":"HK","type":"education","lineage":["https://openalex.org/I14243506"]},{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Tingting Zhou","raw_affiliation_strings":["Department of computing, The Hong Kong Polytechnic University, Hong Kong, China","National Laboratory for Paralleling and Distributed Processing, National University of Defense Technology, Changsha, P.R. China","National Laboratory for Paralleling and Distributed Processing, National University of Defense Technology, Changsha, P.R. China 410073 and Department of computing, The Hong Kong Polytechnic Univer "],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of computing, The Hong Kong Polytechnic University, Hong Kong, China","institution_ids":["https://openalex.org/I14243506"]},{"raw_affiliation_string":"National Laboratory for Paralleling and Distributed Processing, National University of Defense Technology, Changsha, P.R. China","institution_ids":["https://openalex.org/I170215575"]},{"raw_affiliation_string":"National Laboratory for Paralleling and Distributed Processing, National University of Defense Technology, Changsha, P.R. China 410073 and Department of computing, The Hong Kong Polytechnic Univer ","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107049960","display_name":"Keith C. C. Chan","orcid":"https://orcid.org/0000-0001-7962-6564"},"institutions":[{"id":"https://openalex.org/I14243506","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98","country_code":"HK","type":"education","lineage":["https://openalex.org/I14243506"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Keith C. C. Chan","raw_affiliation_strings":["Department of computing, The Hong Kong Polytechnic University, Hong Kong, China","[Dept. of Computing, The Hong Kong Polytechnic University, Hong Kong, China]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of computing, The Hong Kong Polytechnic University, Hong Kong, China","institution_ids":["https://openalex.org/I14243506"]},{"raw_affiliation_string":"[Dept. of Computing, The Hong Kong Polytechnic University, Hong Kong, China]","institution_ids":["https://openalex.org/I14243506"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075704897","display_name":"Zhenghua Wang","orcid":"https://orcid.org/0000-0002-1073-8055"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenghua Wang","raw_affiliation_strings":["National Laboratory for Paralleling and Distributed Processing, National University of Defense Technology, Changsha, P.R. China","National Laboratory for Paralleling and Distributed Processing, National University of Defense Technology, Changsha, P.R. China 410073#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Laboratory for Paralleling and Distributed Processing, National University of Defense Technology, Changsha, P.R. China","institution_ids":["https://openalex.org/I170215575"]},{"raw_affiliation_string":"National Laboratory for Paralleling and Distributed Processing, National University of Defense Technology, Changsha, P.R. China 410073#TAB#","institution_ids":["https://openalex.org/I170215575"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.6912,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.81956873,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"225","last_page":"236"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9815999865531921,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.8421613574028015},{"id":"https://openalex.org/keywords/centrality","display_name":"Centrality","score":0.6882930994033813},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.6671019196510315},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6212671995162964},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.6093237400054932},{"id":"https://openalex.org/keywords/vertex","display_name":"Vertex (graph theory)","score":0.5410091280937195},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.5253899693489075},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5141394734382629},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4959472119808197},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.46575433015823364},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.40985292196273804},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3446474075317383},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.33197152614593506},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.2901430130004883},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.28407615423202515},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2765312194824219},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17989295721054077},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.10797244310379028},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06935039162635803},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0686475932598114}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.8421613574028015},{"id":"https://openalex.org/C53811970","wikidata":"https://www.wikidata.org/wiki/Q5062194","display_name":"Centrality","level":2,"score":0.6882930994033813},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.6671019196510315},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6212671995162964},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.6093237400054932},{"id":"https://openalex.org/C80899671","wikidata":"https://www.wikidata.org/wiki/Q1304193","display_name":"Vertex (graph theory)","level":3,"score":0.5410091280937195},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.5253899693489075},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5141394734382629},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4959472119808197},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.46575433015823364},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.40985292196273804},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3446474075317383},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.33197152614593506},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.2901430130004883},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.28407615423202515},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2765312194824219},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17989295721054077},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.10797244310379028},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06935039162635803},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0686475932598114},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-540-88436-1_20","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-540-88436-1_20","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-540-88436-1_20.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:ira.lib.polyu.edu.hk:10397/70270","is_oa":false,"landing_page_url":"http://hdl.handle.net/10397/70270","pdf_url":null,"source":{"id":"https://openalex.org/S4306400205","display_name":"PolyU Institutional Research Archive (Hong Kong Polytechnic University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I14243506","host_organization_name":"Hong Kong Polytechnic University","host_organization_lineage":["https://openalex.org/I14243506"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"}],"best_oa_location":{"id":"doi:10.1007/978-3-540-88436-1_20","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-540-88436-1_20","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-540-88436-1_20.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1543959853.pdf","grobid_xml":"https://content.openalex.org/works/W1543959853.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W158239557","https://openalex.org/W158478306","https://openalex.org/W1566688548","https://openalex.org/W1577525534","https://openalex.org/W1580108435","https://openalex.org/W1757313384","https://openalex.org/W1941122123","https://openalex.org/W1972740086","https://openalex.org/W1988911258","https://openalex.org/W2009219904","https://openalex.org/W2011079885","https://openalex.org/W2043760664","https://openalex.org/W2096729078","https://openalex.org/W2099264865","https://openalex.org/W2100449089","https://openalex.org/W2101746535","https://openalex.org/W2108859156","https://openalex.org/W2111823238","https://openalex.org/W2158417631","https://openalex.org/W2164627561","https://openalex.org/W2165160309","https://openalex.org/W2337526125","https://openalex.org/W2492974140","https://openalex.org/W4388278440"],"related_works":["https://openalex.org/W4254268221","https://openalex.org/W2038264393","https://openalex.org/W147282674","https://openalex.org/W2112400707","https://openalex.org/W2101991559","https://openalex.org/W4300585845","https://openalex.org/W2152997891","https://openalex.org/W2951248153","https://openalex.org/W2840568513","https://openalex.org/W4287661213"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2016-06-24T00:00:00"}
