{"id":"https://openalex.org/W2117043260","doi":"https://doi.org/10.1007/978-3-540-87989-3_2","title":"Limitations of Pseudogenes in Identifying Gene Losses","display_name":"Limitations of Pseudogenes in Identifying Gene Losses","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W2117043260","doi":"https://doi.org/10.1007/978-3-540-87989-3_2","mag":"2117043260"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-87989-3_2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-87989-3_2","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035378993","display_name":"James C. Costello","orcid":"https://orcid.org/0000-0003-3158-9682"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James C. Costello","raw_affiliation_strings":["Department of Biology, Indiana University, Bloomington, IN, 47405, USA","School of Informatics, Indiana University, Bloomington, IN, 47408, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Indiana University, Bloomington, IN, 47405, USA","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"School of Informatics, Indiana University, Bloomington, IN, 47408, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080164890","display_name":"Mira Han","orcid":"https://orcid.org/0000-0002-0488-1170"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mira V. Han","raw_affiliation_strings":["Department of Biology, Indiana University, Bloomington, IN, 47405, USA","School of Informatics, Indiana University, Bloomington, IN, 47408, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Indiana University, Bloomington, IN, 47405, USA","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"School of Informatics, Indiana University, Bloomington, IN, 47408, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111777782","display_name":"Matthew W. Hahn","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew W. Hahn","raw_affiliation_strings":["Department of Biology, Indiana University, Bloomington, IN, 47405, USA","School of Informatics, Indiana University, Bloomington, IN, 47408, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Indiana University, Bloomington, IN, 47405, USA","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"School of Informatics, Indiana University, Bloomington, IN, 47408, USA","institution_ids":["https://openalex.org/I4210119109"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4210119109"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"14","last_page":"25"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pseudogene","display_name":"Pseudogene","score":0.9837450981140137},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.7632793188095093},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7147655487060547},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6098802089691162},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6043029427528381},{"id":"https://openalex.org/keywords/drosophila-melanogaster","display_name":"Drosophila melanogaster","score":0.5166645050048828},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5059568285942078},{"id":"https://openalex.org/keywords/lineage","display_name":"Lineage (genetic)","score":0.4434846043586731},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.35101860761642456}],"concepts":[{"id":"https://openalex.org/C34957205","wikidata":"https://www.wikidata.org/wiki/Q277338","display_name":"Pseudogene","level":4,"score":0.9837450981140137},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.7632793188095093},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7147655487060547},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6098802089691162},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6043029427528381},{"id":"https://openalex.org/C2780104201","wikidata":"https://www.wikidata.org/wiki/Q130888","display_name":"Drosophila melanogaster","level":3,"score":0.5166645050048828},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5059568285942078},{"id":"https://openalex.org/C2776817793","wikidata":"https://www.wikidata.org/wiki/Q6553369","display_name":"Lineage (genetic)","level":3,"score":0.4434846043586731},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.35101860761642456}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-540-87989-3_2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-87989-3_2","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.411.9875","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.411.9875","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://sites.bio.indiana.edu/~hahnlab/Publications/Costello_etal2008.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6800000071525574}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1661979114","https://openalex.org/W1966803394","https://openalex.org/W1987378985","https://openalex.org/W1988498548","https://openalex.org/W2009692755","https://openalex.org/W2026315272","https://openalex.org/W2033828311","https://openalex.org/W2041624900","https://openalex.org/W2048385877","https://openalex.org/W2054520275","https://openalex.org/W2066036014","https://openalex.org/W2066735040","https://openalex.org/W2079272422","https://openalex.org/W2088028339","https://openalex.org/W2090027454","https://openalex.org/W2095829109","https://openalex.org/W2099762535","https://openalex.org/W2102391602","https://openalex.org/W2106783844","https://openalex.org/W2108787198","https://openalex.org/W2115806022","https://openalex.org/W2118533197","https://openalex.org/W2131558479","https://openalex.org/W2138008048","https://openalex.org/W2146120203","https://openalex.org/W2148972293","https://openalex.org/W2159808435"],"related_works":["https://openalex.org/W4233558935","https://openalex.org/W1554470851","https://openalex.org/W2920061786","https://openalex.org/W2654359665","https://openalex.org/W2625912121","https://openalex.org/W4389300316","https://openalex.org/W2621246910","https://openalex.org/W4379055781","https://openalex.org/W2136345656","https://openalex.org/W2791437416"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
