{"id":"https://openalex.org/W144334492","doi":"https://doi.org/10.1007/978-3-540-87361-7_5","title":"Exact Transcriptome Reconstruction from Short Sequence Reads","display_name":"Exact Transcriptome Reconstruction from Short Sequence Reads","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W144334492","doi":"https://doi.org/10.1007/978-3-540-87361-7_5","mag":"144334492"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-87361-7_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-87361-7_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087487293","display_name":"Vincent Lacroix","orcid":"https://orcid.org/0000-0002-4235-8524"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Vincent Lacroix","raw_affiliation_strings":["Genome Bioinformatics Research Group - CRG, Barcelona, Spain","Genome Bioinformatics Research Group - CRG, Barcelona, Spain#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genome Bioinformatics Research Group - CRG, Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Genome Bioinformatics Research Group - CRG, Barcelona, Spain#TAB#","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075779908","display_name":"Michael Sammeth","orcid":"https://orcid.org/0000-0002-6528-9883"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Michael Sammeth","raw_affiliation_strings":["Genome Bioinformatics Research Group - CRG, Barcelona, Spain","Genome Bioinformatics Research Group - CRG, Barcelona, Spain#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genome Bioinformatics Research Group - CRG, Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Genome Bioinformatics Research Group - CRG, Barcelona, Spain#TAB#","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067701434","display_name":"Roderic Guig\u00f3","orcid":"https://orcid.org/0000-0002-5738-4477"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Roderic Guigo","raw_affiliation_strings":["Genome Bioinformatics Research Group - CRG, Barcelona, Spain","Genome Bioinformatics Research Group - CRG, Barcelona, Spain#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genome Bioinformatics Research Group - CRG, Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Genome Bioinformatics Research Group - CRG, Barcelona, Spain#TAB#","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075689246","display_name":"Anne Bergeron","orcid":null},"institutions":[{"id":"https://openalex.org/I159129438","display_name":"Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al","ror":"https://ror.org/002rjbv21","country_code":"CA","type":"education","lineage":["https://openalex.org/I159129438","https://openalex.org/I49663120"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Anne Bergeron","raw_affiliation_strings":["Comparative Genomics Laboratory, Universit\u00e9 du Qu\u00e9bec \u00e0, Montr\u00e9al, Canada","Comparative Genomics Laboratory, Universit\u00e9 du Qu\u00e9bec \u00e0, Montr\u00e9al, Canada#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Comparative Genomics Laboratory, Universit\u00e9 du Qu\u00e9bec \u00e0, Montr\u00e9al, Canada","institution_ids":["https://openalex.org/I159129438"]},{"raw_affiliation_string":"Comparative Genomics Laboratory, Universit\u00e9 du Qu\u00e9bec \u00e0, Montr\u00e9al, Canada#TAB#","institution_ids":["https://openalex.org/I159129438"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":15.2206,"has_fulltext":false,"cited_by_count":54,"citation_normalized_percentile":{"value":0.99149186,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"50","last_page":"63"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/complement","display_name":"Complement (music)","score":0.6987507343292236},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6888282895088196},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6763644218444824},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6333679556846619},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.5289998650550842},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5122174620628357},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5034710764884949},{"id":"https://openalex.org/keywords/k-mer","display_name":"k-mer","score":0.43539178371429443},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4248812794685364},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3285467028617859},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.32445067167282104},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2838408946990967},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.2520230710506439},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22942206263542175},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.13292622566223145}],"concepts":[{"id":"https://openalex.org/C112313634","wikidata":"https://www.wikidata.org/wiki/Q7886648","display_name":"Complement (music)","level":5,"score":0.6987507343292236},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6888282895088196},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6763644218444824},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6333679556846619},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.5289998650550842},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5122174620628357},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5034710764884949},{"id":"https://openalex.org/C2279292","wikidata":"https://www.wikidata.org/wiki/Q6322851","display_name":"k-mer","level":4,"score":0.43539178371429443},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4248812794685364},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3285467028617859},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.32445067167282104},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2838408946990967},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.2520230710506439},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22942206263542175},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.13292622566223145},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C188082640","wikidata":"https://www.wikidata.org/wiki/Q1780899","display_name":"Complementation","level":4,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-540-87361-7_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-87361-7_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.320.3094","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.320.3094","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://genome.crg.es/~vlacroix/papers/SplicingWabi_revised.pdf","raw_type":"text"},{"id":"pmh:oai:HAL:hal-00428220v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00428220","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"International Workshop on Algorithms in Bioinformatics (WABI), Sep 2008, Karlsruhe, Germany. pp.50-63, &#x27E8;10.1007/978-3-540-87361-7_5&#x27E9;","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.5}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1482206563","https://openalex.org/W1963918734","https://openalex.org/W1970447387","https://openalex.org/W1994154030","https://openalex.org/W2009329319","https://openalex.org/W2087878206","https://openalex.org/W2094448442","https://openalex.org/W2097794038","https://openalex.org/W2101199515","https://openalex.org/W2102304447","https://openalex.org/W2107903949","https://openalex.org/W2120293208","https://openalex.org/W2137138233","https://openalex.org/W2139455449","https://openalex.org/W2143447881","https://openalex.org/W2153169282","https://openalex.org/W2154954867","https://openalex.org/W2160969485","https://openalex.org/W2168909179","https://openalex.org/W2169674658","https://openalex.org/W4255470659"],"related_works":["https://openalex.org/W2399513595","https://openalex.org/W4388386498","https://openalex.org/W2028462563","https://openalex.org/W2982720988","https://openalex.org/W2382566571","https://openalex.org/W4388725868","https://openalex.org/W2104762330","https://openalex.org/W4379374180","https://openalex.org/W2523545060","https://openalex.org/W4243495532"],"abstract_inverted_index":null,"counts_by_year":[{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":11}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
