{"id":"https://openalex.org/W1501132557","doi":"https://doi.org/10.1007/978-3-540-87361-7_4","title":"Read Mapping Algorithms for Single Molecule Sequencing Data","display_name":"Read Mapping Algorithms for Single Molecule Sequencing Data","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W1501132557","doi":"https://doi.org/10.1007/978-3-540-87361-7_4","mag":"1501132557"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-87361-7_4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-87361-7_4","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062447914","display_name":"Vladimir Yanovsky","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vladimir Yanovsky","raw_affiliation_strings":["Department of Computer Science, \u00a0","Department of Computer Science,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, \u00a0","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013978216","display_name":"Stephen M. Rumble","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stephen M. Rumble","raw_affiliation_strings":["Department of Computer Science, \u00a0","Department of Computer Science,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, \u00a0","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science,","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012113499","display_name":"Michael Brudno","orcid":"https://orcid.org/0000-0001-7947-2243"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I4210150520","display_name":"Cellular Research (United States)","ror":"https://ror.org/04jvb9y72","country_code":"US","type":"company","lineage":["https://openalex.org/I4210150520"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Michael Brudno","raw_affiliation_strings":["Department of Computer Science, \u00a0","Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, \u00a0","Department of Computer Science,","Donnelly Centre for Cellular and Biomolecular Research, University of Toronto,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, \u00a0","institution_ids":[]},{"raw_affiliation_string":"Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, \u00a0","institution_ids":["https://openalex.org/I4210150520"]},{"raw_affiliation_string":"Department of Computer Science,","institution_ids":[]},{"raw_affiliation_string":"Donnelly Centre for Cellular and Biomolecular Research, University of Toronto,","institution_ids":["https://openalex.org/I185261750","https://openalex.org/I4210150520"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"38","last_page":"49"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7598322629928589},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6297520995140076},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5556374788284302},{"id":"https://openalex.org/keywords/hybrid-genome-assembly","display_name":"Hybrid genome assembly","score":0.5261130928993225},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.48551154136657715},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.4626942574977875},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.42222660779953003},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.15505173802375793},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07785049080848694}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7598322629928589},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6297520995140076},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5556374788284302},{"id":"https://openalex.org/C113425843","wikidata":"https://www.wikidata.org/wiki/Q5953213","display_name":"Hybrid genome assembly","level":5,"score":0.5261130928993225},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.48551154136657715},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.4626942574977875},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.42222660779953003},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.15505173802375793},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07785049080848694},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-540-87361-7_4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-87361-7_4","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.400.2006","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.400.2006","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.scs.stanford.edu/~rumble/papers/yanovsky_wabi08.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1974646727","https://openalex.org/W1998048394","https://openalex.org/W2070985991","https://openalex.org/W2074231493","https://openalex.org/W2087064593","https://openalex.org/W2087684629","https://openalex.org/W2093057423","https://openalex.org/W2095724872","https://openalex.org/W2132967231","https://openalex.org/W2133098231","https://openalex.org/W2146379626","https://openalex.org/W2175671778","https://openalex.org/W2254458779","https://openalex.org/W2913199219","https://openalex.org/W4205911826"],"related_works":["https://openalex.org/W2767590279","https://openalex.org/W2213265806","https://openalex.org/W3090794301","https://openalex.org/W2166654698","https://openalex.org/W2079322808","https://openalex.org/W2923364412","https://openalex.org/W4210830088","https://openalex.org/W2772185703","https://openalex.org/W1966822396","https://openalex.org/W1975465622"],"abstract_inverted_index":null,"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
