{"id":"https://openalex.org/W1592772772","doi":"https://doi.org/10.1007/978-3-540-85984-0_121","title":"FindSUMO: A PSSM-Based Method for Sumoylation Site Prediction","display_name":"FindSUMO: A PSSM-Based Method for Sumoylation Site Prediction","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W1592772772","doi":"https://doi.org/10.1007/978-3-540-85984-0_121","mag":"1592772772"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-85984-0_121","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-85984-0_121","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011102845","display_name":"Christopher J. Friedline","orcid":"https://orcid.org/0000-0002-6373-4971"},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Christopher J. Friedline","raw_affiliation_strings":["Center for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, VA 23284, USA"],"affiliations":[{"raw_affiliation_string":"Center for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, VA 23284, USA","institution_ids":["https://openalex.org/I184840846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101994798","display_name":"Xueping Zhang","orcid":"https://orcid.org/0000-0003-2032-8831"},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xueping Zhang","raw_affiliation_strings":["Department of Biochemistry, Virginia Commonwealth University, Richmond, VA 23298, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Virginia Commonwealth University, Richmond, VA 23298, USA","institution_ids":["https://openalex.org/I184840846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004206816","display_name":"Zendra E. Zehner","orcid":null},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zendra E. Zehner","raw_affiliation_strings":["Department of Biochemistry, Virginia Commonwealth University, Richmond, VA 23298, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Virginia Commonwealth University, Richmond, VA 23298, USA","institution_ids":["https://openalex.org/I184840846"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006688612","display_name":"Zhongming Zhao","orcid":"https://orcid.org/0000-0002-3477-0914"},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhongming Zhao","raw_affiliation_strings":["Center for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, VA 23284, USA","Departments of Psychiatry and Human Genetics, Virginia Commonwealth University, Richmond, VA 23298, USA"],"affiliations":[{"raw_affiliation_string":"Center for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, VA 23284, USA","institution_ids":["https://openalex.org/I184840846"]},{"raw_affiliation_string":"Departments of Psychiatry and Human Genetics, Virginia Commonwealth University, Richmond, VA 23298, USA","institution_ids":["https://openalex.org/I184840846"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5011102845"],"corresponding_institution_ids":["https://openalex.org/I184840846"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.0159,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.87562851,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1004","last_page":"1011"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sumo-protein","display_name":"SUMO protein","score":0.9927893280982971},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.665317952632904},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.5841196775436401},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34985023736953735},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3387383818626404},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21523940563201904},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1457340121269226},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0740254819393158},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.07016238570213318}],"concepts":[{"id":"https://openalex.org/C171350616","wikidata":"https://www.wikidata.org/wiki/Q61506","display_name":"SUMO protein","level":4,"score":0.9927893280982971},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.665317952632904},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.5841196775436401},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34985023736953735},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3387383818626404},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21523940563201904},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1457340121269226},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0740254819393158},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.07016238570213318},{"id":"https://openalex.org/C25602115","wikidata":"https://www.wikidata.org/wiki/Q407111","display_name":"Ubiquitin","level":3,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-540-85984-0_121","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-85984-0_121","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W95252060","https://openalex.org/W2003199010","https://openalex.org/W2034596702","https://openalex.org/W2041404167","https://openalex.org/W2044514479","https://openalex.org/W2068858732","https://openalex.org/W2112441454","https://openalex.org/W2143883087","https://openalex.org/W2154139219","https://openalex.org/W2222445509"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2053523004","https://openalex.org/W2001367558","https://openalex.org/W3032751721","https://openalex.org/W2088695563","https://openalex.org/W2048124721","https://openalex.org/W2164237668","https://openalex.org/W2091611701","https://openalex.org/W4399500913"],"abstract_inverted_index":null,"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
