{"id":"https://openalex.org/W2142224334","doi":"https://doi.org/10.1007/978-3-540-79450-9_8","title":"Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats","display_name":"Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats","publication_year":2008,"publication_date":"2008-04-29","ids":{"openalex":"https://openalex.org/W2142224334","doi":"https://doi.org/10.1007/978-3-540-79450-9_8","mag":"2142224334"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-79450-9_8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-79450-9_8","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054369332","display_name":"Todd J. Treangen","orcid":"https://orcid.org/0000-0002-3760-564X"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Todd J. Treangen","raw_affiliation_strings":["Dept. of Computer Science, Polytechnic University of Catalonia, Barcelona, Spain","Department of Computer Science, Polytechnic University of Catalonia, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science, Polytechnic University of Catalonia, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]},{"raw_affiliation_string":"Department of Computer Science, Polytechnic University of Catalonia, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047169338","display_name":"Aaron E. Darling","orcid":"https://orcid.org/0000-0003-2397-7925"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I4210146297","display_name":"ARC Centre of Excellence in Advanced Molecular Imaging","ror":"https://ror.org/051e7s436","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1337719021","https://openalex.org/I2801453606","https://openalex.org/I4210132349","https://openalex.org/I4210146297","https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Aaron E. Darling","raw_affiliation_strings":["ARC Centre of Excellence in Bioinformatics, and Institute for Molecular Bioscience, The University of Queensland, Brisbane, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ARC Centre of Excellence in Bioinformatics, and Institute for Molecular Bioscience, The University of Queensland, Brisbane, Australia","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I4210146297"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023552489","display_name":"Mark A. Ragan","orcid":"https://orcid.org/0000-0003-1672-7020"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I4210146297","display_name":"ARC Centre of Excellence in Advanced Molecular Imaging","ror":"https://ror.org/051e7s436","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1337719021","https://openalex.org/I2801453606","https://openalex.org/I4210132349","https://openalex.org/I4210146297","https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Mark A. Ragan","raw_affiliation_strings":["ARC Centre of Excellence in Bioinformatics, and Institute for Molecular Bioscience, The University of Queensland, Brisbane, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ARC Centre of Excellence in Bioinformatics, and Institute for Molecular Bioscience, The University of Queensland, Brisbane, Australia","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I4210146297"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068256758","display_name":"Xavier Messeguer","orcid":"https://orcid.org/0000-0001-7430-4857"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Xavier Messeguer","raw_affiliation_strings":["Dept. of Computer Science, Polytechnic University of Catalonia, Barcelona, Spain","Department of Computer Science, Polytechnic University of Catalonia, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science, Polytechnic University of Catalonia, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]},{"raw_affiliation_string":"Department of Computer Science, Polytechnic University of Catalonia, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.6914,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.84936932,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"74","last_page":"86"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/smith\u2013waterman-algorithm","display_name":"Smith\u2013Waterman algorithm","score":0.6589995622634888},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5577476620674133},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.5433011054992676},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5216401219367981},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4829239547252655},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.47917285561561584},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4583640992641449},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.45790860056877136},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.4315378665924072},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3873949348926544},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3638704717159271},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3564169108867645},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19226238131523132},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17065668106079102},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.10878923535346985}],"concepts":[{"id":"https://openalex.org/C72802188","wikidata":"https://www.wikidata.org/wiki/Q1683352","display_name":"Smith\u2013Waterman algorithm","level":5,"score":0.6589995622634888},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5577476620674133},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.5433011054992676},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5216401219367981},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4829239547252655},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.47917285561561584},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4583640992641449},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.45790860056877136},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.4315378665924072},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3873949348926544},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3638704717159271},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3564169108867645},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19226238131523132},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17065668106079102},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.10878923535346985},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-540-79450-9_8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-79450-9_8","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.184.3752","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.184.3752","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://wwwabi.snv.jussieu.fr/treangen/procrast2.pdf","raw_type":"text"},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:196500","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1502056033","https://openalex.org/W1558365920","https://openalex.org/W2002638840","https://openalex.org/W2036295979","https://openalex.org/W2053276922","https://openalex.org/W2057998009","https://openalex.org/W2104041769","https://openalex.org/W2106882534","https://openalex.org/W2112132489","https://openalex.org/W2112664161","https://openalex.org/W2118581189","https://openalex.org/W2128591967","https://openalex.org/W2132505033","https://openalex.org/W2132926880","https://openalex.org/W2136145671","https://openalex.org/W2138000345","https://openalex.org/W2140698423","https://openalex.org/W2140872496","https://openalex.org/W2141411672","https://openalex.org/W2142268426","https://openalex.org/W2144362290","https://openalex.org/W2146974293","https://openalex.org/W2155237411","https://openalex.org/W2157674573","https://openalex.org/W2158714788","https://openalex.org/W2167359290","https://openalex.org/W2167673155","https://openalex.org/W4298026129"],"related_works":["https://openalex.org/W2948014085","https://openalex.org/W2103737249","https://openalex.org/W2051969447","https://openalex.org/W2079145549","https://openalex.org/W2004215917","https://openalex.org/W1486249959","https://openalex.org/W2468116983","https://openalex.org/W2012129103","https://openalex.org/W4389053053","https://openalex.org/W2903170547"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
