{"id":"https://openalex.org/W133892736","doi":"https://doi.org/10.1007/978-3-540-79450-9_29","title":"GlycoBrowser: A Tool for Contextual Visualization of Biological Data and Pathways Using Ontologies","display_name":"GlycoBrowser: A Tool for Contextual Visualization of Biological Data and Pathways Using Ontologies","publication_year":2008,"publication_date":"2008-04-29","ids":{"openalex":"https://openalex.org/W133892736","doi":"https://doi.org/10.1007/978-3-540-79450-9_29","mag":"133892736"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-79450-9_29","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-79450-9_29","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082823589","display_name":"Matthew Eavenson","orcid":null},"institutions":[{"id":"https://openalex.org/I4210156583","display_name":"Laboratoire d'Informatique de Paris-Nord","ror":"https://ror.org/05g1zjw44","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210091279","https://openalex.org/I4210156583","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["FR","US"],"is_corresponding":true,"raw_author_name":"Matthew Eavenson","raw_affiliation_strings":["Computer Science Department,","Computer Science Department, University of Georgia, Athens, GA#TAB#"],"affiliations":[{"raw_affiliation_string":"Computer Science Department,","institution_ids":["https://openalex.org/I4210156583"]},{"raw_affiliation_string":"Computer Science Department, University of Georgia, Athens, GA#TAB#","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004593875","display_name":"Maciej Janik","orcid":null},"institutions":[{"id":"https://openalex.org/I4210156583","display_name":"Laboratoire d'Informatique de Paris-Nord","ror":"https://ror.org/05g1zjw44","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210091279","https://openalex.org/I4210156583","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["FR","US"],"is_corresponding":false,"raw_author_name":"Maciej Janik","raw_affiliation_strings":["Computer Science Department,","Computer Science Department, University of Georgia, Athens, GA#TAB#"],"affiliations":[{"raw_affiliation_string":"Computer Science Department,","institution_ids":["https://openalex.org/I4210156583"]},{"raw_affiliation_string":"Computer Science Department, University of Georgia, Athens, GA#TAB#","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009008447","display_name":"S. Nimmagadda","orcid":null},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]},{"id":"https://openalex.org/I4210156583","display_name":"Laboratoire d'Informatique de Paris-Nord","ror":"https://ror.org/05g1zjw44","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210091279","https://openalex.org/I4210156583","https://openalex.org/I4210159245"]}],"countries":["FR","US"],"is_corresponding":false,"raw_author_name":"Shravya Nimmagadda","raw_affiliation_strings":["Computer Science Department,","Computer Science Department, University of Georgia, Athens, GA#TAB#"],"affiliations":[{"raw_affiliation_string":"Computer Science Department,","institution_ids":["https://openalex.org/I4210156583"]},{"raw_affiliation_string":"Computer Science Department, University of Georgia, Athens, GA#TAB#","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023847957","display_name":"John A. Miller","orcid":"https://orcid.org/0009-0003-8145-1849"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]},{"id":"https://openalex.org/I4210156583","display_name":"Laboratoire d'Informatique de Paris-Nord","ror":"https://ror.org/05g1zjw44","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210091279","https://openalex.org/I4210156583","https://openalex.org/I4210159245"]}],"countries":["FR","US"],"is_corresponding":false,"raw_author_name":"John A. Miller","raw_affiliation_strings":["Computer Science Department,","Computer Science Department, University of Georgia, Athens, GA#TAB#"],"affiliations":[{"raw_affiliation_string":"Computer Science Department,","institution_ids":["https://openalex.org/I4210156583"]},{"raw_affiliation_string":"Computer Science Department, University of Georgia, Athens, GA#TAB#","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113601779","display_name":"Krys J. Kochut","orcid":null},"institutions":[{"id":"https://openalex.org/I4210156583","display_name":"Laboratoire d'Informatique de Paris-Nord","ror":"https://ror.org/05g1zjw44","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210091279","https://openalex.org/I4210156583","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["FR","US"],"is_corresponding":false,"raw_author_name":"Krys J. Kochut","raw_affiliation_strings":["Computer Science Department,","Computer Science Department, University of Georgia, Athens, GA#TAB#"],"affiliations":[{"raw_affiliation_string":"Computer Science Department,","institution_ids":["https://openalex.org/I4210156583"]},{"raw_affiliation_string":"Computer Science Department, University of Georgia, Athens, GA#TAB#","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069319935","display_name":"William S. York","orcid":"https://orcid.org/0000-0003-0883-3237"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William S. York","raw_affiliation_strings":["Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602,","Complex Carbohydrate Research Center, University of Georgia, Athens, Ga"],"affiliations":[{"raw_affiliation_string":"Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602,","institution_ids":["https://openalex.org/I165733156"]},{"raw_affiliation_string":"Complex Carbohydrate Research Center, University of Georgia, Athens, Ga","institution_ids":["https://openalex.org/I165733156"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5082823589"],"corresponding_institution_ids":["https://openalex.org/I165733156","https://openalex.org/I4210156583"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.0171,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.86730173,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"305","last_page":"316"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9876000285148621,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9801999926567078,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7252605557441711},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7124690413475037},{"id":"https://openalex.org/keywords/glycan","display_name":"Glycan","score":0.7030547261238098},{"id":"https://openalex.org/keywords/overlay","display_name":"Overlay","score":0.4898540675640106},{"id":"https://openalex.org/keywords/data-exploration","display_name":"Data exploration","score":0.4895123243331909},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.45899680256843567},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.45846542716026306},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.41528505086898804},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33860063552856445},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32490381598472595},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1083604097366333},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10070958733558655}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7252605557441711},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7124690413475037},{"id":"https://openalex.org/C206212055","wikidata":"https://www.wikidata.org/wiki/Q2553138","display_name":"Glycan","level":3,"score":0.7030547261238098},{"id":"https://openalex.org/C136085584","wikidata":"https://www.wikidata.org/wiki/Q910289","display_name":"Overlay","level":2,"score":0.4898540675640106},{"id":"https://openalex.org/C2780977526","wikidata":"https://www.wikidata.org/wiki/Q42417149","display_name":"Data exploration","level":3,"score":0.4895123243331909},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.45899680256843567},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.45846542716026306},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.41528505086898804},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33860063552856445},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32490381598472595},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1083604097366333},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10070958733558655},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C108625454","wikidata":"https://www.wikidata.org/wiki/Q187126","display_name":"Glycoprotein","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-540-79450-9_29","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-79450-9_29","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.128.2629","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.128.2629","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://lsdis.cs.uga.edu/~mjanik/EJNMKY-ISBRA2008-GlycoBrowser.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.137.4414","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.137.4414","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.uga.edu/~jam/glyco/papers/glyb/GlycoBrowser.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1504083444","https://openalex.org/W1560194153","https://openalex.org/W1842847600","https://openalex.org/W1989728131","https://openalex.org/W2010502047","https://openalex.org/W2021239799","https://openalex.org/W2074906123","https://openalex.org/W2101491706","https://openalex.org/W2104793113","https://openalex.org/W2110280725","https://openalex.org/W2124450302","https://openalex.org/W2149209973","https://openalex.org/W2152415665","https://openalex.org/W2156918975","https://openalex.org/W2159482845","https://openalex.org/W2159675211","https://openalex.org/W2160845726","https://openalex.org/W2170097370","https://openalex.org/W2495215577","https://openalex.org/W2501765443","https://openalex.org/W2624907881","https://openalex.org/W4231824804","https://openalex.org/W4247550095"],"related_works":["https://openalex.org/W2801736511","https://openalex.org/W4387885925","https://openalex.org/W3010400351","https://openalex.org/W2150076299","https://openalex.org/W4247730801","https://openalex.org/W1982953486","https://openalex.org/W2035714874","https://openalex.org/W2250903427","https://openalex.org/W2618693267","https://openalex.org/W1964999418"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
