{"id":"https://openalex.org/W1854009489","doi":"https://doi.org/10.1007/978-3-540-78839-3_4","title":"Reconstructing the Evolutionary History of Complex Human Gene Clusters","display_name":"Reconstructing the Evolutionary History of Complex Human Gene Clusters","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W1854009489","doi":"https://doi.org/10.1007/978-3-540-78839-3_4","mag":"1854009489"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-78839-3_4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-78839-3_4","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100433501","display_name":"Yu Zhang","orcid":"https://orcid.org/0000-0002-1778-8389"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yu Zhang","raw_affiliation_strings":["Center for Comparative Genomics and Bioinformatics, 506B Wartik Lab, Penn State University, University Park, PA 16802, USA","Department of Statistics, Penn State University, University Park, PA 16802, USA","Center for Comparative Genomics and Bioinformatics, Penn State University, University Park, PA and Department of Statistics, Penn State University, University Park, PA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Comparative Genomics and Bioinformatics, 506B Wartik Lab, Penn State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"Department of Statistics, Penn State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"Center for Comparative Genomics and Bioinformatics, Penn State University, University Park, PA and Department of Statistics, Penn State University, University Park, PA#TAB#","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012853928","display_name":"Giltae Song","orcid":"https://orcid.org/0000-0001-8796-4678"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Giltae Song","raw_affiliation_strings":["Center for Comparative Genomics and Bioinformatics, 506B Wartik Lab, Penn State University, University Park, PA 16802, USA","Center for Comparative Genomics and Bioinformatics, Penn State University, University Park, PA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Comparative Genomics and Bioinformatics, 506B Wartik Lab, Penn State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"Center for Comparative Genomics and Bioinformatics, Penn State University, University Park, PA#TAB#","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053772564","display_name":"Tom\u00e1\u0161 Vina\u0159","orcid":"https://orcid.org/0000-0003-3898-3447"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tom\u00e1\u0161 Vina\u0159","raw_affiliation_strings":["Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853, USA","#N#        Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853, USA","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"#N#        Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107244756","display_name":"Eric D. Green","orcid":"https://orcid.org/0000-0002-2974-3823"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210090236","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210090236"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric D. Green","raw_affiliation_strings":["Genome Technology Branch and NIH Intramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, 20892, USA","Genome Technology Branch and NIH Intramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genome Technology Branch and NIH Intramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, 20892, USA","institution_ids":["https://openalex.org/I4210090236","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"Genome Technology Branch and NIH Intramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland#TAB#","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061240989","display_name":"Adam Siepel","orcid":"https://orcid.org/0000-0002-3557-7219"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Siepel","raw_affiliation_strings":["Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853, USA","#N#        Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853, USA","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"#N#        Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071092709","display_name":"Webb Miller","orcid":null},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Webb Miller","raw_affiliation_strings":["Center for Comparative Genomics and Bioinformatics, 506B Wartik Lab, Penn State University, University Park, PA 16802, USA","Center for Comparative Genomics and Bioinformatics, Penn State University, University Park, PA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Comparative Genomics and Bioinformatics, 506B Wartik Lab, Penn State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"Center for Comparative Genomics and Bioinformatics, Penn State University, University Park, PA#TAB#","institution_ids":["https://openalex.org/I130769515"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"29","last_page":"49"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.5835362076759338},{"id":"https://openalex.org/keywords/genealogy","display_name":"Genealogy","score":0.38441893458366394},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3628461956977844},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35316041111946106},{"id":"https://openalex.org/keywords/history","display_name":"History","score":0.35186028480529785},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.33988091349601746}],"concepts":[{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.5835362076759338},{"id":"https://openalex.org/C53553401","wikidata":"https://www.wikidata.org/wiki/Q47307","display_name":"Genealogy","level":1,"score":0.38441893458366394},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3628461956977844},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35316041111946106},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.35186028480529785},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.33988091349601746}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/978-3-540-78839-3_4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-78839-3_4","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:repository.cshl.edu:31043","is_oa":false,"landing_page_url":"https://repository.cshl.edu/id/eprint/31043/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402288","display_name":"Cold Spring Harbor Laboratory Institutional Repository (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Book Section"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.139.5654","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.139.5654","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.bioinformatics.uwaterloo.ca/~tvinar/papers/08dupcount.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.387.731","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.387.731","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.ceng.metu.edu.tr/~tcan/ceng734/Schedule/reading5.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1902800866","https://openalex.org/W1985530443","https://openalex.org/W1985768944","https://openalex.org/W2002079712","https://openalex.org/W2013798014","https://openalex.org/W2030973831","https://openalex.org/W2048296798","https://openalex.org/W2057998009","https://openalex.org/W2069739265","https://openalex.org/W2081450236","https://openalex.org/W2089657469","https://openalex.org/W2092120709","https://openalex.org/W2099437040","https://openalex.org/W2112132489","https://openalex.org/W2125548284","https://openalex.org/W2139694282","https://openalex.org/W2154759645","https://openalex.org/W2163177727","https://openalex.org/W2163293625","https://openalex.org/W2164766734","https://openalex.org/W2167673155","https://openalex.org/W2168909179","https://openalex.org/W2171547914","https://openalex.org/W2612812586","https://openalex.org/W2916427899","https://openalex.org/W4229487902"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W1603503160","https://openalex.org/W4300446800","https://openalex.org/W4210361923","https://openalex.org/W2367644325","https://openalex.org/W2901977559","https://openalex.org/W4236341574","https://openalex.org/W2600458431","https://openalex.org/W2884522787","https://openalex.org/W3190435234"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
