{"id":"https://openalex.org/W1482206563","doi":"https://doi.org/10.1007/978-3-540-78839-3_32","title":"Bubbles: Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs","display_name":"Bubbles: Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W1482206563","doi":"https://doi.org/10.1007/978-3-540-78839-3_32","mag":"1482206563"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-78839-3_32","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-78839-3_32","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075779908","display_name":"Michael Sammeth","orcid":"https://orcid.org/0000-0002-6528-9883"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Michael Sammeth","raw_affiliation_strings":["Genome Bioinformatics Lab, Center for Genomic Regulation, E-08003, Barcelona,","Center for Genomic Regulation, Genome Bioinformatics Lab, Barcelona#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genome Bioinformatics Lab, Center for Genomic Regulation, E-08003, Barcelona,","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Center for Genomic Regulation, Genome Bioinformatics Lab, Barcelona#TAB#","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005629452","display_name":"Gabriel Valiente","orcid":"https://orcid.org/0000-0001-9194-2703"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Gabriel Valiente","raw_affiliation_strings":["Algorithms, Bioinformatics, Complexity and Formal Methods Research Group, Technical University of Catalonia, E-08034, Barcelona,","Algorithms, Bioinformatics, Complexity and Formal Methods Research Group, Technical University of Catalonia, Barcelona#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Algorithms, Bioinformatics, Complexity and Formal Methods Research Group, Technical University of Catalonia, E-08034, Barcelona,","institution_ids":["https://openalex.org/I9617848"]},{"raw_affiliation_string":"Algorithms, Bioinformatics, Complexity and Formal Methods Research Group, Technical University of Catalonia, Barcelona#TAB#","institution_ids":["https://openalex.org/I9617848"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067701434","display_name":"Roderic Guig\u00f3","orcid":"https://orcid.org/0000-0002-5738-4477"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Roderic Guig\u00f3","raw_affiliation_strings":["Genome Bioinformatics Lab, Center for Genomic Regulation, E-08003, Barcelona,","Center for Genomic Regulation, Genome Bioinformatics Lab, Barcelona#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genome Bioinformatics Lab, Center for Genomic Regulation, E-08003, Barcelona,","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Center for Genomic Regulation, Genome Bioinformatics Lab, Barcelona#TAB#","institution_ids":["https://openalex.org/I4210137962"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5075779908"],"corresponding_institution_ids":["https://openalex.org/I4210137962"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.5371,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.8699032,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"372","last_page":"395"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12784","display_name":"Modular Robots and Swarm Intelligence","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/2210","display_name":"Mechanical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.6705650687217712},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.6621031761169434},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.636646568775177},{"id":"https://openalex.org/keywords/splice","display_name":"splice","score":0.5849303007125854},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5302132368087769},{"id":"https://openalex.org/keywords/intron","display_name":"Intron","score":0.5261818170547485},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4359610974788666},{"id":"https://openalex.org/keywords/exon","display_name":"Exon","score":0.4283744692802429},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.39199379086494446},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3614519238471985},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.29319751262664795},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17988789081573486},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16554856300354004},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.07674649357795715}],"concepts":[{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.6705650687217712},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.6621031761169434},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.636646568775177},{"id":"https://openalex.org/C2780989783","wikidata":"https://www.wikidata.org/wiki/Q7578557","display_name":"splice","level":3,"score":0.5849303007125854},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5302132368087769},{"id":"https://openalex.org/C94671646","wikidata":"https://www.wikidata.org/wiki/Q207551","display_name":"Intron","level":3,"score":0.5261818170547485},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4359610974788666},{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.4283744692802429},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.39199379086494446},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3614519238471985},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.29319751262664795},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17988789081573486},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16554856300354004},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.07674649357795715}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-540-78839-3_32","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-78839-3_32","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":62,"referenced_works":["https://openalex.org/W8823967","https://openalex.org/W1511821640","https://openalex.org/W1530353793","https://openalex.org/W1549202508","https://openalex.org/W1750913658","https://openalex.org/W1813070175","https://openalex.org/W1823586796","https://openalex.org/W1857325778","https://openalex.org/W1942623951","https://openalex.org/W1955360692","https://openalex.org/W1963918734","https://openalex.org/W1965991219","https://openalex.org/W1966361376","https://openalex.org/W1971278266","https://openalex.org/W1971981203","https://openalex.org/W1972067938","https://openalex.org/W1979937918","https://openalex.org/W1985576809","https://openalex.org/W1989109522","https://openalex.org/W1991692416","https://openalex.org/W1994154030","https://openalex.org/W2008932218","https://openalex.org/W2014791263","https://openalex.org/W2015221277","https://openalex.org/W2015660958","https://openalex.org/W2039817277","https://openalex.org/W2041956242","https://openalex.org/W2044147175","https://openalex.org/W2044500704","https://openalex.org/W2045984686","https://openalex.org/W2049485068","https://openalex.org/W2053220812","https://openalex.org/W2054612314","https://openalex.org/W2055681276","https://openalex.org/W2057479447","https://openalex.org/W2064702087","https://openalex.org/W2069252364","https://openalex.org/W2070276431","https://openalex.org/W2071221957","https://openalex.org/W2077697996","https://openalex.org/W2087878206","https://openalex.org/W2097531178","https://openalex.org/W2103886753","https://openalex.org/W2104565621","https://openalex.org/W2107903949","https://openalex.org/W2110570734","https://openalex.org/W2125946663","https://openalex.org/W2128239740","https://openalex.org/W2130022567","https://openalex.org/W2136145671","https://openalex.org/W2137986897","https://openalex.org/W2143176671","https://openalex.org/W2143447881","https://openalex.org/W2148834813","https://openalex.org/W2160286042","https://openalex.org/W2163516449","https://openalex.org/W2163570826","https://openalex.org/W2166724094","https://openalex.org/W2168909179","https://openalex.org/W2170906307","https://openalex.org/W2782267736","https://openalex.org/W4245145908"],"related_works":["https://openalex.org/W2157125050","https://openalex.org/W2062868756","https://openalex.org/W2158241396","https://openalex.org/W2018387988","https://openalex.org/W2074860825","https://openalex.org/W4283117924","https://openalex.org/W2564462691","https://openalex.org/W2138045300","https://openalex.org/W2115063609","https://openalex.org/W1815093033"],"abstract_inverted_index":null,"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
