{"id":"https://openalex.org/W1539550196","doi":"https://doi.org/10.1007/978-3-540-78839-3_3","title":"CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads","display_name":"CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W1539550196","doi":"https://doi.org/10.1007/978-3-540-78839-3_3","mag":"1539550196"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-78839-3_3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-78839-3_3","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075573393","display_name":"Sourav Chatterji","orcid":null},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sourav Chatterji","raw_affiliation_strings":["Genome Center, U C Davis, Davis, CA 95616, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genome Center, U C Davis, Davis, CA 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052397462","display_name":"Ichitaro Yamazaki","orcid":"https://orcid.org/0000-0002-6196-2508"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ichitaro Yamazaki","raw_affiliation_strings":["Computer Science Department, U C Davis, Davis, CA 95616, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, U C Davis, Davis, CA 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053733794","display_name":"Zhaojun Bai","orcid":"https://orcid.org/0000-0002-1143-2429"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhaojun Bai","raw_affiliation_strings":["Computer Science Department, U C Davis, Davis, CA 95616, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, U C Davis, Davis, CA 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059066311","display_name":"Jonathan A. Eisen","orcid":"https://orcid.org/0000-0002-0159-2197"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonathan A. Eisen","raw_affiliation_strings":["Genome Center, U C Davis, Davis, CA 95616, USA","The Joint Genome Institute, Walnut Creek, CA 94598, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genome Center, U C Davis, Davis, CA 95616, USA","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"The Joint Genome Institute, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5075573393"],"corresponding_institution_ids":["https://openalex.org/I84218800"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":21.5398,"has_fulltext":false,"cited_by_count":140,"citation_normalized_percentile":{"value":0.99520755,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":null,"issue":null,"first_page":"17","last_page":"28"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.972599983215332,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.8153603076934814},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.811627209186554},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6571259498596191},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5567365884780884},{"id":"https://openalex.org/keywords/shotgun","display_name":"Shotgun","score":0.5370354652404785},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.5328140258789062},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4963899254798889},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4915812909603119},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.47141239047050476},{"id":"https://openalex.org/keywords/bin","display_name":"Bin","score":0.46331122517585754},{"id":"https://openalex.org/keywords/k-mer","display_name":"k-mer","score":0.4449618458747864},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4094405472278595},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.347978413105011},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.2976256310939789},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2621679902076721},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.23416626453399658},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2266388237476349},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14735019207000732}],"concepts":[{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.8153603076934814},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.811627209186554},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6571259498596191},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5567365884780884},{"id":"https://openalex.org/C2781434637","wikidata":"https://www.wikidata.org/wiki/Q486396","display_name":"Shotgun","level":3,"score":0.5370354652404785},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.5328140258789062},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4963899254798889},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4915812909603119},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.47141239047050476},{"id":"https://openalex.org/C156273044","wikidata":"https://www.wikidata.org/wiki/Q4913766","display_name":"Bin","level":2,"score":0.46331122517585754},{"id":"https://openalex.org/C2279292","wikidata":"https://www.wikidata.org/wiki/Q6322851","display_name":"k-mer","level":4,"score":0.4449618458747864},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4094405472278595},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.347978413105011},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2976256310939789},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2621679902076721},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.23416626453399658},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2266388237476349},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14735019207000732},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-540-78839-3_3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-78839-3_3","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.186.4259","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.186.4259","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://homepage.mac.com/jonathan_eisen/PDFs/100.Chatterji.2008.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.41999998688697815}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W71597126","https://openalex.org/W1506690472","https://openalex.org/W1562379206","https://openalex.org/W1591294031","https://openalex.org/W1908619978","https://openalex.org/W1966711026","https://openalex.org/W2001141328","https://openalex.org/W2023829651","https://openalex.org/W2040163542","https://openalex.org/W2068308871","https://openalex.org/W2068687524","https://openalex.org/W2072812562","https://openalex.org/W2075623226","https://openalex.org/W2082521980","https://openalex.org/W2082612735","https://openalex.org/W2093830129","https://openalex.org/W2099533874","https://openalex.org/W2099741732","https://openalex.org/W2099991744","https://openalex.org/W2105199251","https://openalex.org/W2106104287","https://openalex.org/W2113601822","https://openalex.org/W2116895571","https://openalex.org/W2121947440","https://openalex.org/W2124637227","https://openalex.org/W2126809954","https://openalex.org/W2132415967","https://openalex.org/W2132603077","https://openalex.org/W2136145671","https://openalex.org/W2137137397","https://openalex.org/W2139436782","https://openalex.org/W2140095548","https://openalex.org/W2140211206","https://openalex.org/W2145336165","https://openalex.org/W2147378425","https://openalex.org/W2148654450","https://openalex.org/W2150337627","https://openalex.org/W2169267759","https://openalex.org/W2294798173","https://openalex.org/W2798909945","https://openalex.org/W2912210943","https://openalex.org/W3099514962","https://openalex.org/W4250857377"],"related_works":["https://openalex.org/W4210312276","https://openalex.org/W1982130217","https://openalex.org/W2417514914","https://openalex.org/W2018832993","https://openalex.org/W4255415692","https://openalex.org/W3128701120","https://openalex.org/W2733238538","https://openalex.org/W4256345205","https://openalex.org/W1641084016","https://openalex.org/W2132414125"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":14},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":15},{"year":2012,"cited_by_count":14}],"updated_date":"2026-05-20T08:49:12.498775","created_date":"2025-10-10T00:00:00"}
