{"id":"https://openalex.org/W2025174715","doi":"https://doi.org/10.1007/978-3-540-78839-3_20","title":"An Integrative Network Approach to Map the Transcriptome to the Phenome","display_name":"An Integrative Network Approach to Map the Transcriptome to the Phenome","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W2025174715","doi":"https://doi.org/10.1007/978-3-540-78839-3_20","mag":"2025174715"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-78839-3_20","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-78839-3_20","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002520586","display_name":"Michael R. Mehan","orcid":null},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael R. Mehan","raw_affiliation_strings":["Program in Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA","Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA","institution_ids":["https://openalex.org/I1174212"]},{"raw_affiliation_string":"Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA#TAB#","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034447662","display_name":"Juan Nunez-Iglesias","orcid":"https://orcid.org/0000-0002-7239-5828"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Juan Nunez-Iglesias","raw_affiliation_strings":["Program in Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA","Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA","institution_ids":["https://openalex.org/I1174212"]},{"raw_affiliation_string":"Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA#TAB#","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080415080","display_name":"Mrinal Kalakrishnan","orcid":"https://orcid.org/0000-0003-4292-9857"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mrinal Kalakrishnan","raw_affiliation_strings":["Program in Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA","Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA","institution_ids":["https://openalex.org/I1174212"]},{"raw_affiliation_string":"Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA#TAB#","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105360062","display_name":"Michael S. Waterman","orcid":null},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael S. Waterman","raw_affiliation_strings":["Program in Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA","Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA","institution_ids":["https://openalex.org/I1174212"]},{"raw_affiliation_string":"Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA#TAB#","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050577808","display_name":"Xianghong Jasmine Zhou","orcid":"https://orcid.org/0000-0002-4522-7490"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xianghong Jasmine Zhou","raw_affiliation_strings":["Program in Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA","Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA","institution_ids":["https://openalex.org/I1174212"]},{"raw_affiliation_string":"Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA#TAB#","institution_ids":["https://openalex.org/I1174212"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.0198,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.87851087,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"232","last_page":"245"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phenome","display_name":"Phenome","score":0.9665296673774719},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.7108560800552368},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4328835606575012},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.39560291171073914},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.374697744846344},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36895087361335754},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11760333180427551},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08508366346359253},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.05143746733665466},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.03299140930175781}],"concepts":[{"id":"https://openalex.org/C7952369","wikidata":"https://www.wikidata.org/wiki/Q844116","display_name":"Phenome","level":4,"score":0.9665296673774719},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.7108560800552368},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4328835606575012},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39560291171073914},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.374697744846344},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36895087361335754},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11760333180427551},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08508366346359253},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.05143746733665466},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.03299140930175781}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-540-78839-3_20","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-78839-3_20","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.372.8586","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.372.8586","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cmb.usc.edu/papers/msw_papers/msw-167.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1502421007","https://openalex.org/W1551600243","https://openalex.org/W1552716293","https://openalex.org/W1596683029","https://openalex.org/W1642278221","https://openalex.org/W2012852001","https://openalex.org/W2014022579","https://openalex.org/W2020999234","https://openalex.org/W2024060531","https://openalex.org/W2036836182","https://openalex.org/W2039597097","https://openalex.org/W2050748701","https://openalex.org/W2062530650","https://openalex.org/W2103835486","https://openalex.org/W2104261859","https://openalex.org/W2106202847","https://openalex.org/W2114725328","https://openalex.org/W2115659887","https://openalex.org/W2123466824","https://openalex.org/W2131987814","https://openalex.org/W2134725489","https://openalex.org/W2136850043","https://openalex.org/W2141146725","https://openalex.org/W2152495216","https://openalex.org/W2154362705","https://openalex.org/W2159583324","https://openalex.org/W2160556205","https://openalex.org/W2160875291","https://openalex.org/W4231824804","https://openalex.org/W4232284651"],"related_works":["https://openalex.org/W2086237400","https://openalex.org/W2274048411","https://openalex.org/W2082860237","https://openalex.org/W4282960395","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2061542922","https://openalex.org/W3212460220"],"abstract_inverted_index":null,"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
