{"id":"https://openalex.org/W1576825745","doi":"https://doi.org/10.1007/978-3-540-77220-0_11","title":"An FPGA-Based Accelerator for Multiple Biological Sequence Alignment with DIALIGN","display_name":"An FPGA-Based Accelerator for Multiple Biological Sequence Alignment with DIALIGN","publication_year":2007,"publication_date":"2007-01-01","ids":{"openalex":"https://openalex.org/W1576825745","doi":"https://doi.org/10.1007/978-3-540-77220-0_11","mag":"1576825745"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-77220-0_11","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-77220-0_11","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012195474","display_name":"Azzedine Boukerche","orcid":"https://orcid.org/0000-0002-3851-9938"},"institutions":[{"id":"https://openalex.org/I153718931","display_name":"University of Ottawa","ror":"https://ror.org/03c4mmv16","country_code":"CA","type":"education","lineage":["https://openalex.org/I153718931"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Azzedine Boukerche","raw_affiliation_strings":["SITE-School of Information Technology and Engineering, University of Ottawa, Canada"],"affiliations":[{"raw_affiliation_string":"SITE-School of Information Technology and Engineering, University of Ottawa, Canada","institution_ids":["https://openalex.org/I153718931"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111619748","display_name":"Jan M. Correa","orcid":null},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Jan Mendonca Correa","raw_affiliation_strings":["Department of Computer Science, University of Brasilia, Brazil","Dept. of Computer Science, University of Bras\u00edlia, Brazil#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Brasilia, Brazil","institution_ids":["https://openalex.org/I150729083"]},{"raw_affiliation_string":"Dept. of Computer Science, University of Bras\u00edlia, Brazil#TAB#","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005717412","display_name":"Alba Cristina Magalh\u00e3es Alves de Melo","orcid":"https://orcid.org/0000-0001-5191-5209"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Alba Cristina Magalhaes Alves de Melo","raw_affiliation_strings":["Department of Computer Science, University of Brasilia, Brazil","Dept. of Computer Science, University of Bras\u00edlia, Brazil#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Brasilia, Brazil","institution_ids":["https://openalex.org/I150729083"]},{"raw_affiliation_string":"Dept. of Computer Science, University of Bras\u00edlia, Brazil#TAB#","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019378528","display_name":"Ricardo Pezzuol Jacobi","orcid":"https://orcid.org/0000-0002-4520-7641"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Ricardo Pezzuol Jacobi","raw_affiliation_strings":["Department of Computer Science, University of Brasilia, Brazil","Dept. of Computer Science, University of Bras\u00edlia, Brazil#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Brasilia, Brazil","institution_ids":["https://openalex.org/I150729083"]},{"raw_affiliation_string":"Dept. of Computer Science, University of Bras\u00edlia, Brazil#TAB#","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046527156","display_name":"Adson Ferreira da Rocha","orcid":"https://orcid.org/0000-0003-4532-1791"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Adson Ferreira Rocha","raw_affiliation_strings":["Department of Electrical Engineering, University of Brasilia, Brazil","[Dept. of Electrical Engineering, University of Brasilia, Brazil]"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, University of Brasilia, Brazil","institution_ids":["https://openalex.org/I150729083"]},{"raw_affiliation_string":"[Dept. of Electrical Engineering, University of Brasilia, Brazil]","institution_ids":["https://openalex.org/I150729083"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5012195474"],"corresponding_institution_ids":["https://openalex.org/I153718931"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.7427,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.90187317,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"71","last_page":"82"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.8171181678771973},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8092951774597168},{"id":"https://openalex.org/keywords/field-programmable-gate-array","display_name":"Field-programmable gate array","score":0.7937023043632507},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6435577273368835},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.6173003911972046},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5644429326057434},{"id":"https://openalex.org/keywords/hardware-acceleration","display_name":"Hardware acceleration","score":0.5094495415687561},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.48497581481933594},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.4825241267681122},{"id":"https://openalex.org/keywords/parallel-processing","display_name":"Parallel processing","score":0.41907182335853577},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.4105564057826996},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.3560781478881836},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.22398683428764343},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15747615694999695},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.14535120129585266}],"concepts":[{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.8171181678771973},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8092951774597168},{"id":"https://openalex.org/C42935608","wikidata":"https://www.wikidata.org/wiki/Q190411","display_name":"Field-programmable gate array","level":2,"score":0.7937023043632507},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6435577273368835},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.6173003911972046},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5644429326057434},{"id":"https://openalex.org/C13164978","wikidata":"https://www.wikidata.org/wiki/Q600158","display_name":"Hardware acceleration","level":3,"score":0.5094495415687561},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.48497581481933594},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.4825241267681122},{"id":"https://openalex.org/C106515295","wikidata":"https://www.wikidata.org/wiki/Q26806595","display_name":"Parallel processing","level":2,"score":0.41907182335853577},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.4105564057826996},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.3560781478881836},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.22398683428764343},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15747615694999695},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.14535120129585266},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-540-77220-0_11","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-77220-0_11","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W65415256","https://openalex.org/W100825204","https://openalex.org/W178414959","https://openalex.org/W1589993665","https://openalex.org/W1592614241","https://openalex.org/W1595838892","https://openalex.org/W1974326986","https://openalex.org/W1990061958","https://openalex.org/W2002638840","https://openalex.org/W2021852335","https://openalex.org/W2036295979","https://openalex.org/W2052831012","https://openalex.org/W2068448872","https://openalex.org/W2074231493","https://openalex.org/W2087064593","https://openalex.org/W2101418959","https://openalex.org/W2106882534","https://openalex.org/W2122942724","https://openalex.org/W2144362290","https://openalex.org/W2163997137","https://openalex.org/W2166760518","https://openalex.org/W2168077168","https://openalex.org/W2168652696","https://openalex.org/W2610179052","https://openalex.org/W3214380909","https://openalex.org/W4245668478"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2532502681","https://openalex.org/W2111937814","https://openalex.org/W2162923930","https://openalex.org/W2234221250","https://openalex.org/W1482324242","https://openalex.org/W2133116680","https://openalex.org/W2091678889","https://openalex.org/W2029514038","https://openalex.org/W2143599190"],"abstract_inverted_index":null,"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
