{"id":"https://openalex.org/W1579842940","doi":"https://doi.org/10.1007/978-3-540-74960-8_2","title":"A Pseudo-boolean Programming Approach for Computing the Breakpoint Distance Between Two Genomes with Duplicate Genes","display_name":"A Pseudo-boolean Programming Approach for Computing the Breakpoint Distance Between Two Genomes with Duplicate Genes","publication_year":2007,"publication_date":"2007-08-29","ids":{"openalex":"https://openalex.org/W1579842940","doi":"https://doi.org/10.1007/978-3-540-74960-8_2","mag":"1579842940"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-74960-8_2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-74960-8_2","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042837453","display_name":"S\u00e9bastien Angibaud","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210165258","display_name":"Laboratoire d'informatique de Nantes Atlantique","ror":"https://ror.org/05487pd16","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I4210165258","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I97188460","display_name":"Nantes Universit\u00e9","ror":"https://ror.org/03gnr7b55","country_code":"FR","type":"education","lineage":["https://openalex.org/I97188460"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"S\u00e9bastien Angibaud","raw_affiliation_strings":["Laboratoire d\u2019Informatique de Nantes-Atlantique (LINA), FRE CNRS 2729, Universit\u00e9 de Nantes, 2 rue de la Houssini\u00e8re, 44322 Nantes Cedex 3, France","Laboratoire d'Informatique de Nantes-Atlantique, FRE, CNRS, Universit\u00e9 de Nantes, Nantes Cedex 3, France#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire d\u2019Informatique de Nantes-Atlantique (LINA), FRE CNRS 2729, Universit\u00e9 de Nantes, 2 rue de la Houssini\u00e8re, 44322 Nantes Cedex 3, France","institution_ids":["https://openalex.org/I4210165258","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire d'Informatique de Nantes-Atlantique, FRE, CNRS, Universit\u00e9 de Nantes, Nantes Cedex 3, France#TAB#","institution_ids":["https://openalex.org/I97188460","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048361747","display_name":"Guillaume Fertin","orcid":"https://orcid.org/0000-0002-8251-2012"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210165258","display_name":"Laboratoire d'informatique de Nantes Atlantique","ror":"https://ror.org/05487pd16","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I4210165258","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I97188460","display_name":"Nantes Universit\u00e9","ror":"https://ror.org/03gnr7b55","country_code":"FR","type":"education","lineage":["https://openalex.org/I97188460"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guillaume Fertin","raw_affiliation_strings":["Laboratoire d\u2019Informatique de Nantes-Atlantique (LINA), FRE CNRS 2729, Universit\u00e9 de Nantes, 2 rue de la Houssini\u00e8re, 44322 Nantes Cedex 3, France","Laboratoire d'Informatique de Nantes-Atlantique, FRE, CNRS, Universit\u00e9 de Nantes, Nantes Cedex 3, France#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire d\u2019Informatique de Nantes-Atlantique (LINA), FRE CNRS 2729, Universit\u00e9 de Nantes, 2 rue de la Houssini\u00e8re, 44322 Nantes Cedex 3, France","institution_ids":["https://openalex.org/I4210165258","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire d'Informatique de Nantes-Atlantique, FRE, CNRS, Universit\u00e9 de Nantes, Nantes Cedex 3, France#TAB#","institution_ids":["https://openalex.org/I97188460","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031719973","display_name":"Irena Rusu","orcid":"https://orcid.org/0000-0002-0444-3496"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210165258","display_name":"Laboratoire d'informatique de Nantes Atlantique","ror":"https://ror.org/05487pd16","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I4210165258","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I97188460","display_name":"Nantes Universit\u00e9","ror":"https://ror.org/03gnr7b55","country_code":"FR","type":"education","lineage":["https://openalex.org/I97188460"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Irena Rusu","raw_affiliation_strings":["Laboratoire d\u2019Informatique de Nantes-Atlantique (LINA), FRE CNRS 2729, Universit\u00e9 de Nantes, 2 rue de la Houssini\u00e8re, 44322 Nantes Cedex 3, France","Laboratoire d'Informatique de Nantes-Atlantique, FRE, CNRS, Universit\u00e9 de Nantes, Nantes Cedex 3, France#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire d\u2019Informatique de Nantes-Atlantique (LINA), FRE CNRS 2729, Universit\u00e9 de Nantes, 2 rue de la Houssini\u00e8re, 44322 Nantes Cedex 3, France","institution_ids":["https://openalex.org/I4210165258","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire d'Informatique de Nantes-Atlantique, FRE, CNRS, Universit\u00e9 de Nantes, Nantes Cedex 3, France#TAB#","institution_ids":["https://openalex.org/I97188460","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049059694","display_name":"Annelyse Th\u00e9venin","orcid":null},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Annelyse Th\u00e9venin","raw_affiliation_strings":["Laboratoire de Recherche en Informatique (LRI), UMR CNRS 8623, Facult\u00e9 des Sciences d\u2019Orsay - Universit\u00e9 Paris-Sud, 91405 Orsay, France","Laboratoire de Recherche en Informatique, UMR, CNRS, Facult\u00e9 des Sciences d'Orsay, Universit\u00e9 Paris-Sud, Orsay, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Recherche en Informatique (LRI), UMR CNRS 8623, Facult\u00e9 des Sciences d\u2019Orsay - Universit\u00e9 Paris-Sud, 91405 Orsay, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210144804"]},{"raw_affiliation_string":"Laboratoire de Recherche en Informatique, UMR, CNRS, Facult\u00e9 des Sciences d'Orsay, Universit\u00e9 Paris-Sud, Orsay, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027495509","display_name":"St\u00e9phane Vialette","orcid":"https://orcid.org/0000-0003-2308-6970"},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"St\u00e9phane Vialette","raw_affiliation_strings":["Laboratoire de Recherche en Informatique (LRI), UMR CNRS 8623, Facult\u00e9 des Sciences d\u2019Orsay - Universit\u00e9 Paris-Sud, 91405 Orsay, France","Laboratoire de Recherche en Informatique, UMR, CNRS, Facult\u00e9 des Sciences d'Orsay, Universit\u00e9 Paris-Sud, Orsay, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Recherche en Informatique (LRI), UMR CNRS 8623, Facult\u00e9 des Sciences d\u2019Orsay - Universit\u00e9 Paris-Sud, 91405 Orsay, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210144804"]},{"raw_affiliation_string":"Laboratoire de Recherche en Informatique, UMR, CNRS, Facult\u00e9 des Sciences d'Orsay, Universit\u00e9 Paris-Sud, Orsay, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.8653,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.85609827,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"16","last_page":"29"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11617","display_name":"Enzyme Production and Characterization","score":0.9865999817848206,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breakpoint","display_name":"Breakpoint","score":0.810208797454834},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7814673185348511},{"id":"https://openalex.org/keywords/adjacency-list","display_name":"Adjacency list","score":0.6005233526229858},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5695052146911621},{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.48392850160598755},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.46336647868156433},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.4541638493537903},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4343511760234833},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38069644570350647},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.35688674449920654},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.33044880628585815},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.29437994956970215}],"concepts":[{"id":"https://openalex.org/C206936463","wikidata":"https://www.wikidata.org/wiki/Q634179","display_name":"Breakpoint","level":4,"score":0.810208797454834},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7814673185348511},{"id":"https://openalex.org/C110484373","wikidata":"https://www.wikidata.org/wiki/Q264398","display_name":"Adjacency list","level":2,"score":0.6005233526229858},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5695052146911621},{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.48392850160598755},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.46336647868156433},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.4541638493537903},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4343511760234833},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38069644570350647},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.35688674449920654},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.33044880628585815},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.29437994956970215},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C138626823","wikidata":"https://www.wikidata.org/wiki/Q916504","display_name":"Chromosomal translocation","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-540-74960-8_2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-74960-8_2","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:HAL:hal-00417902v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00417902","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"5th RECOMB Comparative Genomics Satellite Workshop (RECOMB-CG 2007), 2007, San Diego, United States. pp.16-29","raw_type":"Conference papers"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W602132365","https://openalex.org/W1479777405","https://openalex.org/W1494919299","https://openalex.org/W1506292197","https://openalex.org/W1507091143","https://openalex.org/W1525914985","https://openalex.org/W1532397568","https://openalex.org/W1555413501","https://openalex.org/W1573866825","https://openalex.org/W1604502977","https://openalex.org/W1963547452","https://openalex.org/W2017500947","https://openalex.org/W2030568492","https://openalex.org/W2096466922","https://openalex.org/W2103184499","https://openalex.org/W2112858958","https://openalex.org/W2116758077","https://openalex.org/W2142096960","https://openalex.org/W2147442986","https://openalex.org/W2151053705","https://openalex.org/W2165858176","https://openalex.org/W3108068186","https://openalex.org/W3188069612","https://openalex.org/W4213255380"],"related_works":["https://openalex.org/W2036289360","https://openalex.org/W2003824598","https://openalex.org/W2606481030","https://openalex.org/W2123012074","https://openalex.org/W1979375946","https://openalex.org/W2117117412","https://openalex.org/W2378211422","https://openalex.org/W2102889349","https://openalex.org/W2118050488","https://openalex.org/W2058655866"],"abstract_inverted_index":null,"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
