{"id":"https://openalex.org/W2117209895","doi":"https://doi.org/10.1007/978-3-540-74960-8_10","title":"A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications","display_name":"A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications","publication_year":2007,"publication_date":"2007-01-01","ids":{"openalex":"https://openalex.org/W2117209895","doi":"https://doi.org/10.1007/978-3-540-74960-8_10","mag":"2117209895"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-74960-8_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-74960-8_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100626893","display_name":"Jian Ma","orcid":"https://orcid.org/0000-0002-4202-5834"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jian Ma","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95064, USA","Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95064, USA","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA#TAB#","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006718448","display_name":"Aakrosh Ratan","orcid":"https://orcid.org/0000-0002-0782-3056"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aakrosh Ratan","raw_affiliation_strings":["Center for Comparative Genomics and Bioinformatics, Penn State University, University Park, PA 16802, USA","Center for Comparative Genomics and Bioinformatics, Penn State University, University Park, PA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Comparative Genomics and Bioinformatics, Penn State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"Center for Comparative Genomics and Bioinformatics, Penn State University, University Park, PA#TAB#","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012300835","display_name":"Louxin Zhang","orcid":"https://orcid.org/0000-0003-0260-824X"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Louxin Zhang","raw_affiliation_strings":["Department of Mathematics, National University of Singapore, 117543, Singapore","(Department of Mathematics, National University of Singapore, Singapore)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, National University of Singapore, 117543, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"(Department of Mathematics, National University of Singapore, Singapore)","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071092709","display_name":"Webb Miller","orcid":null},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Webb Miller","raw_affiliation_strings":["Center for Comparative Genomics and Bioinformatics, Penn State University, University Park, PA 16802, USA","Center for Comparative Genomics and Bioinformatics, Penn State University, University Park, PA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Comparative Genomics and Bioinformatics, Penn State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"Center for Comparative Genomics and Bioinformatics, Penn State University, University Park, PA#TAB#","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090849321","display_name":"David Haussler","orcid":"https://orcid.org/0000-0003-1533-4575"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Haussler","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95064, USA","Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95064, USA","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA#TAB#","institution_ids":["https://openalex.org/I185103710"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"122","last_page":"135"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6925536394119263},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.5909385085105896},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5109788179397583},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.46847596764564514},{"id":"https://openalex.org/keywords/ancestor","display_name":"Ancestor","score":0.423595666885376},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.38468480110168457},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3209938406944275},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20986998081207275},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.19465917348861694},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.07894986867904663}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6925536394119263},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.5909385085105896},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5109788179397583},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.46847596764564514},{"id":"https://openalex.org/C2780422015","wikidata":"https://www.wikidata.org/wiki/Q402152","display_name":"Ancestor","level":2,"score":0.423595666885376},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.38468480110168457},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3209938406944275},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20986998081207275},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.19465917348861694},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.07894986867904663},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-540-74960-8_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-74960-8_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/104513","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/104513","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Conference Paper"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.94.5427","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.94.5427","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.bx.psu.edu/miller_lab/dist/jian_ma.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W152315924","https://openalex.org/W602132365","https://openalex.org/W1507091143","https://openalex.org/W1573203924","https://openalex.org/W1963627601","https://openalex.org/W1976450663","https://openalex.org/W1983811433","https://openalex.org/W1990725287","https://openalex.org/W2008047531","https://openalex.org/W2010207599","https://openalex.org/W2017262287","https://openalex.org/W2029943378","https://openalex.org/W2034350206","https://openalex.org/W2049796549","https://openalex.org/W2060973867","https://openalex.org/W2061646232","https://openalex.org/W2095669835","https://openalex.org/W2096466922","https://openalex.org/W2107537542","https://openalex.org/W2111839706","https://openalex.org/W2130640131","https://openalex.org/W2133090982","https://openalex.org/W2135281627","https://openalex.org/W2159892619","https://openalex.org/W2163892779","https://openalex.org/W2219944153","https://openalex.org/W4231886136","https://openalex.org/W4244097892","https://openalex.org/W4254717640"],"related_works":["https://openalex.org/W3042165818","https://openalex.org/W2384106458","https://openalex.org/W2380970557","https://openalex.org/W4205679181","https://openalex.org/W2180748061","https://openalex.org/W2348928503","https://openalex.org/W219676397","https://openalex.org/W595332949","https://openalex.org/W2987420353","https://openalex.org/W1491897707"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
