{"id":"https://openalex.org/W1487967440","doi":"https://doi.org/10.1007/978-3-540-74771-0_24","title":"Constructing Structural Alignment of RNA Sequences by Detecting and Assessing Conserved Stems","display_name":"Constructing Structural Alignment of RNA Sequences by Detecting and Assessing Conserved Stems","publication_year":2007,"publication_date":"2007-08-24","ids":{"openalex":"https://openalex.org/W1487967440","doi":"https://doi.org/10.1007/978-3-540-74771-0_24","mag":"1487967440"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-74771-0_24","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-74771-0_24","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069270422","display_name":"Xiaoyong Fang","orcid":null},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyong Fang","raw_affiliation_strings":["School of Computer Science, National University of Defense Technology 410073, Changsha, China","School of Computer Science National University of Defense Technology, Changsha, China#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, National University of Defense Technology 410073, Changsha, China","institution_ids":["https://openalex.org/I170215575"]},{"raw_affiliation_string":"School of Computer Science National University of Defense Technology, Changsha, China#TAB#","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061811574","display_name":"Zhigang Luo","orcid":"https://orcid.org/0000-0002-7552-201X"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhigang Luo","raw_affiliation_strings":["School of Computer Science, National University of Defense Technology 410073, Changsha, China","School of Computer Science National University of Defense Technology, Changsha, China#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, National University of Defense Technology 410073, Changsha, China","institution_ids":["https://openalex.org/I170215575"]},{"raw_affiliation_string":"School of Computer Science National University of Defense Technology, Changsha, China#TAB#","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075790845","display_name":"Bo Yuan","orcid":"https://orcid.org/0000-0001-7278-5116"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Bo Yuan","raw_affiliation_strings":["Department of Biomedical Informatics, College of Medicine and Public Health, Ohio State University, 43210-1239 Columbus Ohio, USA","Department of Biomedical Informatics, College of Medicine and Public Health, Ohio State University, Columbus, Ohio#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, College of Medicine and Public Health, Ohio State University, 43210-1239 Columbus Ohio, USA","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"Department of Biomedical Informatics, College of Medicine and Public Health, Ohio State University, Columbus, Ohio#TAB#","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075704897","display_name":"Zhenghua Wang","orcid":"https://orcid.org/0000-0002-1073-8055"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenghua Wang","raw_affiliation_strings":["School of Computer Science, National University of Defense Technology 410073, Changsha, China","School of Computer Science National University of Defense Technology, Changsha, China#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, National University of Defense Technology 410073, Changsha, China","institution_ids":["https://openalex.org/I170215575"]},{"raw_affiliation_string":"School of Computer Science National University of Defense Technology, Changsha, China#TAB#","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100584912","display_name":"Fan Ding","orcid":"https://orcid.org/0000-0001-6511-5616"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fan Ding","raw_affiliation_strings":["School of Computer Science, National University of Defense Technology 410073, Changsha, China","School of Computer Science National University of Defense Technology, Changsha, China#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, National University of Defense Technology 410073, Changsha, China","institution_ids":["https://openalex.org/I170215575"]},{"raw_affiliation_string":"School of Computer Science National University of Defense Technology, Changsha, China#TAB#","institution_ids":["https://openalex.org/I170215575"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5061811574","https://openalex.org/A5075790845"],"corresponding_institution_ids":["https://openalex.org/I170215575","https://openalex.org/I52357470"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.05835821,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"208","last_page":"217"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.6785197854042053},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.6221327185630798},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6192529797554016},{"id":"https://openalex.org/keywords/structural-alignment","display_name":"Structural alignment","score":0.6154102087020874},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6026418209075928},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.5585365295410156},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5529850721359253},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5312044024467468},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.47950249910354614},{"id":"https://openalex.org/keywords/position","display_name":"Position (finance)","score":0.46935755014419556},{"id":"https://openalex.org/keywords/conserved-sequence","display_name":"Conserved sequence","score":0.4457538425922394},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.42229801416397095},{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.41033509373664856},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2642471194267273},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25481978058815},{"id":"https://openalex.org/keywords/base-sequence","display_name":"Base sequence","score":0.20326298475265503},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.15056446194648743},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10889860987663269}],"concepts":[{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.6785197854042053},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.6221327185630798},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6192529797554016},{"id":"https://openalex.org/C4668613","wikidata":"https://www.wikidata.org/wiki/Q4116110","display_name":"Structural alignment","level":5,"score":0.6154102087020874},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6026418209075928},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.5585365295410156},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5529850721359253},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5312044024467468},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.47950249910354614},{"id":"https://openalex.org/C198082294","wikidata":"https://www.wikidata.org/wiki/Q3399648","display_name":"Position (finance)","level":2,"score":0.46935755014419556},{"id":"https://openalex.org/C199216141","wikidata":"https://www.wikidata.org/wiki/Q4995178","display_name":"Conserved sequence","level":4,"score":0.4457538425922394},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.42229801416397095},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.41033509373664856},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2642471194267273},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25481978058815},{"id":"https://openalex.org/C3017666073","wikidata":"https://www.wikidata.org/wiki/Q1764062","display_name":"Base sequence","level":3,"score":0.20326298475265503},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.15056446194648743},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10889860987663269},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-540-74771-0_24","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-74771-0_24","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W149500278","https://openalex.org/W1542426682","https://openalex.org/W1994647406","https://openalex.org/W2009570821","https://openalex.org/W2009736453","https://openalex.org/W2018216725","https://openalex.org/W2033706116","https://openalex.org/W2095145214","https://openalex.org/W2102046276","https://openalex.org/W2106882534","https://openalex.org/W2114143204","https://openalex.org/W2116619380","https://openalex.org/W2120893338","https://openalex.org/W2122507690","https://openalex.org/W2136513153","https://openalex.org/W2137076005","https://openalex.org/W2137640371","https://openalex.org/W2144362290","https://openalex.org/W2158381555","https://openalex.org/W2166745309","https://openalex.org/W2430835060","https://openalex.org/W3041019241","https://openalex.org/W4245668478"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2111937814","https://openalex.org/W2029514038","https://openalex.org/W2133116680","https://openalex.org/W1482324242","https://openalex.org/W2141411672","https://openalex.org/W2468116983","https://openalex.org/W2088487249","https://openalex.org/W187239587","https://openalex.org/W2158700816"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
