{"id":"https://openalex.org/W1542565836","doi":"https://doi.org/10.1007/978-3-540-74126-8_30","title":"HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding","display_name":"HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding","publication_year":2007,"publication_date":"2007-08-23","ids":{"openalex":"https://openalex.org/W1542565836","doi":"https://doi.org/10.1007/978-3-540-74126-8_30","mag":"1542565836"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-74126-8_30","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-74126-8_30","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005818804","display_name":"Hosna Jabbari","orcid":"https://orcid.org/0000-0002-7155-2297"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Hosna Jabbari","raw_affiliation_strings":["Dept. of Computer Science, U. of British Columbia,","Dept. of Computer Science, U. of British Columbia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science, U. of British Columbia,","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Dept. of Computer Science, U. of British Columbia","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015034623","display_name":"Anne Condon","orcid":"https://orcid.org/0000-0003-1458-1259"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Anne Condon","raw_affiliation_strings":["Dept. of Computer Science, U. of British Columbia,","Dept. of Computer Science, U. of British Columbia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science, U. of British Columbia,","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Dept. of Computer Science, U. of British Columbia","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062127372","display_name":"Ana Pop","orcid":"https://orcid.org/0000-0002-0107-9553"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ana Pop","raw_affiliation_strings":["Dept. of Electrical and Computer Engineering, U. of British Columbia,","Dept. of Electrical and Computer Engineering, U. of British Columbia#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Electrical and Computer Engineering, U. of British Columbia,","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Dept. of Electrical and Computer Engineering, U. of British Columbia#TAB#","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037589339","display_name":"Cristina Pop","orcid":"https://orcid.org/0000-0002-9088-8589"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Cristina Pop","raw_affiliation_strings":["Dept. of Electrical and Computer Engineering, U. of British Columbia,","Dept. of Electrical and Computer Engineering, U. of British Columbia#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Electrical and Computer Engineering, U. of British Columbia,","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Dept. of Electrical and Computer Engineering, U. of British Columbia#TAB#","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056417821","display_name":"Yinglei Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Yinglei Zhao","raw_affiliation_strings":["Dept. of Computer Science, U. of British Columbia,","Dept. of Computer Science, U. of British Columbia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science, U. of British Columbia,","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Dept. of Computer Science, U. of British Columbia","institution_ids":["https://openalex.org/I141945490"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":4.9325,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.94810105,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"323","last_page":"334"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7484519481658936},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.6196232438087463},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.43556270003318787},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.367997944355011},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3373190760612488},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.33701324462890625},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33669668436050415},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1221531331539154},{"id":"https://openalex.org/keywords/structural-engineering","display_name":"Structural engineering","score":0.07263550162315369},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.05938535928726196},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.048138827085494995}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7484519481658936},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.6196232438087463},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.43556270003318787},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.367997944355011},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3373190760612488},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.33701324462890625},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33669668436050415},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1221531331539154},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.07263550162315369},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.05938535928726196},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.048138827085494995},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-540-74126-8_30","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-74126-8_30","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy","score":0.8999999761581421}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1481166764","https://openalex.org/W1543796220","https://openalex.org/W1589421353","https://openalex.org/W1725615870","https://openalex.org/W1966857768","https://openalex.org/W1979988863","https://openalex.org/W1983721296","https://openalex.org/W1988884185","https://openalex.org/W1999096372","https://openalex.org/W2009818318","https://openalex.org/W2042881722","https://openalex.org/W2054028885","https://openalex.org/W2057590917","https://openalex.org/W2066315011","https://openalex.org/W2104141342","https://openalex.org/W2109297587","https://openalex.org/W2123241418","https://openalex.org/W2128705009","https://openalex.org/W2138455866","https://openalex.org/W2167673850","https://openalex.org/W2790566919","https://openalex.org/W4234879553","https://openalex.org/W4234887284"],"related_works":["https://openalex.org/W4385457841","https://openalex.org/W2581348958","https://openalex.org/W4367048159","https://openalex.org/W962838231","https://openalex.org/W2600828970","https://openalex.org/W1932179720","https://openalex.org/W2133839648","https://openalex.org/W4388307933","https://openalex.org/W3134749134","https://openalex.org/W4238732637"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
