{"id":"https://openalex.org/W1487600774","doi":"https://doi.org/10.1007/978-3-540-74126-8_23","title":"On-Line Viterbi Algorithm for Analysis of Long Biological Sequences","display_name":"On-Line Viterbi Algorithm for Analysis of Long Biological Sequences","publication_year":2007,"publication_date":"2007-08-23","ids":{"openalex":"https://openalex.org/W1487600774","doi":"https://doi.org/10.1007/978-3-540-74126-8_23","mag":"1487600774"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-74126-8_23","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-74126-8_23","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/0704.0062","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017541388","display_name":"Rastislav \u0160r\u00e1mek","orcid":null},"institutions":[{"id":"https://openalex.org/I74788687","display_name":"Comenius University Bratislava","ror":"https://ror.org/0587ef340","country_code":"SK","type":"education","lineage":["https://openalex.org/I74788687"]}],"countries":["SK"],"is_corresponding":false,"raw_author_name":"Rastislav \u0160r\u00e1mek","raw_affiliation_strings":["Dept. of Computer Science, Comenius University, Bratislava, Slovakia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science, Comenius University, Bratislava, Slovakia","institution_ids":["https://openalex.org/I74788687"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058053699","display_name":"Bro\u0148a Brejov\u00e1","orcid":"https://orcid.org/0000-0002-9483-1766"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bro\u0148a Brejov\u00e1","raw_affiliation_strings":["Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853, USA","#N#        Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853, USA","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"#N#        Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053772564","display_name":"Tom\u00e1\u0161 Vina\u0159","orcid":"https://orcid.org/0000-0003-3898-3447"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tom\u00e1\u0161 Vina\u0159","raw_affiliation_strings":["#N#        Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"#N#        Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY","institution_ids":["https://openalex.org/I205783295"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.4484,"has_fulltext":false,"cited_by_count":32,"citation_normalized_percentile":{"value":0.90004995,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"240","last_page":"251"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/viterbi-algorithm","display_name":"Viterbi algorithm","score":0.8965314626693726},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.8270852565765381},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7302132248878479},{"id":"https://openalex.org/keywords/viterbi-decoder","display_name":"Viterbi decoder","score":0.7229732275009155},{"id":"https://openalex.org/keywords/soft-output-viterbi-algorithm","display_name":"Soft output Viterbi algorithm","score":0.6520291566848755},{"id":"https://openalex.org/keywords/iterative-viterbi-decoding","display_name":"Iterative Viterbi decoding","score":0.6351888179779053},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6323134303092957},{"id":"https://openalex.org/keywords/forward-algorithm","display_name":"Forward algorithm","score":0.5524255633354187},{"id":"https://openalex.org/keywords/decoding-methods","display_name":"Decoding methods","score":0.5445520877838135},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.44837886095046997},{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.4161062240600586},{"id":"https://openalex.org/keywords/markov-model","display_name":"Markov model","score":0.360140860080719},{"id":"https://openalex.org/keywords/sequential-decoding","display_name":"Sequential decoding","score":0.35880711674690247},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3343493342399597},{"id":"https://openalex.org/keywords/speech-recognition","display_name":"Speech recognition","score":0.2981084883213043},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2887037992477417},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15868258476257324},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1323547661304474},{"id":"https://openalex.org/keywords/variable-order-markov-model","display_name":"Variable-order Markov model","score":0.09800884127616882},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.09501543641090393}],"concepts":[{"id":"https://openalex.org/C60582962","wikidata":"https://www.wikidata.org/wiki/Q83886","display_name":"Viterbi algorithm","level":3,"score":0.8965314626693726},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.8270852565765381},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7302132248878479},{"id":"https://openalex.org/C117379686","wikidata":"https://www.wikidata.org/wiki/Q6996459","display_name":"Viterbi decoder","level":3,"score":0.7229732275009155},{"id":"https://openalex.org/C130319729","wikidata":"https://www.wikidata.org/wiki/Q83886","display_name":"Soft output Viterbi algorithm","level":5,"score":0.6520291566848755},{"id":"https://openalex.org/C113638808","wikidata":"https://www.wikidata.org/wiki/Q6094410","display_name":"Iterative Viterbi decoding","level":5,"score":0.6351888179779053},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6323134303092957},{"id":"https://openalex.org/C196455857","wikidata":"https://www.wikidata.org/wiki/Q5473264","display_name":"Forward algorithm","level":5,"score":0.5524255633354187},{"id":"https://openalex.org/C57273362","wikidata":"https://www.wikidata.org/wiki/Q576722","display_name":"Decoding methods","level":2,"score":0.5445520877838135},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.44837886095046997},{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.4161062240600586},{"id":"https://openalex.org/C163836022","wikidata":"https://www.wikidata.org/wiki/Q6771326","display_name":"Markov model","level":3,"score":0.360140860080719},{"id":"https://openalex.org/C193969084","wikidata":"https://www.wikidata.org/wiki/Q7452500","display_name":"Sequential decoding","level":4,"score":0.35880711674690247},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3343493342399597},{"id":"https://openalex.org/C28490314","wikidata":"https://www.wikidata.org/wiki/Q189436","display_name":"Speech recognition","level":1,"score":0.2981084883213043},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2887037992477417},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15868258476257324},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1323547661304474},{"id":"https://openalex.org/C54907487","wikidata":"https://www.wikidata.org/wiki/Q7915688","display_name":"Variable-order Markov model","level":4,"score":0.09800884127616882},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.09501543641090393},{"id":"https://openalex.org/C157125643","wikidata":"https://www.wikidata.org/wiki/Q884707","display_name":"Block code","level":3,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/978-3-540-74126-8_23","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-74126-8_23","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:arXiv.org:0704.0062","is_oa":true,"landing_page_url":"http://arxiv.org/abs/0704.0062","pdf_url":"https://arxiv.org/pdf/0704.0062","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.139.3450","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.139.3450","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.bioinformatics.uwaterloo.ca/~tvinar/papers/07hmmmem.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.411.5828","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.411.5828","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.ti.inf.ethz.ch/pw/publications/papers07/SramekBrejovaVinar.pdf","raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:0704.0062","is_oa":true,"landing_page_url":"http://arxiv.org/abs/0704.0062","pdf_url":"https://arxiv.org/pdf/0704.0062","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W1483191758","https://openalex.org/W1499594845","https://openalex.org/W1992396120","https://openalex.org/W2009570821","https://openalex.org/W2016220155","https://openalex.org/W2081106094","https://openalex.org/W2087456401","https://openalex.org/W2101664494","https://openalex.org/W2102659807","https://openalex.org/W2120815702","https://openalex.org/W2125838338","https://openalex.org/W2128607924","https://openalex.org/W2130395351","https://openalex.org/W2132285838","https://openalex.org/W2139516179","https://openalex.org/W2142384583","https://openalex.org/W2145191876","https://openalex.org/W2146098979","https://openalex.org/W2152770371","https://openalex.org/W2153645832","https://openalex.org/W2155403259","https://openalex.org/W2166187656","https://openalex.org/W2169071224","https://openalex.org/W2169527813","https://openalex.org/W2751862591","https://openalex.org/W2797135730","https://openalex.org/W4236747242","https://openalex.org/W4245668478","https://openalex.org/W4301441647"],"related_works":["https://openalex.org/W1915619113","https://openalex.org/W2544568790","https://openalex.org/W2143297499","https://openalex.org/W2921374214","https://openalex.org/W3194244515","https://openalex.org/W2361773811","https://openalex.org/W171822854","https://openalex.org/W1546736863","https://openalex.org/W123028466","https://openalex.org/W2073817053"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-08-05T07:39:15.569665","created_date":"2025-10-10T00:00:00"}
