{"id":"https://openalex.org/W1489022499","doi":"https://doi.org/10.1007/978-3-540-73545-8_6","title":"Seed-Based Exclusion Method for Non-coding RNA Gene Search","display_name":"Seed-Based Exclusion Method for Non-coding RNA Gene Search","publication_year":2007,"publication_date":"2007-08-17","ids":{"openalex":"https://openalex.org/W1489022499","doi":"https://doi.org/10.1007/978-3-540-73545-8_6","mag":"1489022499"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-73545-8_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-73545-8_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://inria.hal.science/inria-00271642","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026864910","display_name":"Jean-Eudes Duchesne","orcid":null},"institutions":[{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Jean-Eudes Duchesne","raw_affiliation_strings":["DIRO \u2013 Universit\u00e9 de Montr\u00e9al \u2013 H3C 3J7, Canada","DIRO Universit\u00e9 de Montr\u00e9al, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"DIRO \u2013 Universit\u00e9 de Montr\u00e9al \u2013 H3C 3J7, Canada","institution_ids":["https://openalex.org/I70931966"]},{"raw_affiliation_string":"DIRO Universit\u00e9 de Montr\u00e9al, Canada#TAB#","institution_ids":["https://openalex.org/I70931966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036539061","display_name":"Mathieu Giraud","orcid":"https://orcid.org/0000-0003-2741-8047"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Mathieu Giraud","raw_affiliation_strings":["Bioinfo/Sequoia \u2013 LIFL/CNRS, Universit\u00e9 de Lille 1, France"],"affiliations":[{"raw_affiliation_string":"Bioinfo/Sequoia \u2013 LIFL/CNRS, Universit\u00e9 de Lille 1, France","institution_ids":["https://openalex.org/I2279609970","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041470344","display_name":"Nadia El-Mabrouk","orcid":"https://orcid.org/0000-0002-5385-1015"},"institutions":[{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Nadia El-Mabrouk","raw_affiliation_strings":["DIRO \u2013 Universit\u00e9 de Montr\u00e9al \u2013 H3C 3J7, Canada","DIRO Universit\u00e9 de Montr\u00e9al, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"DIRO \u2013 Universit\u00e9 de Montr\u00e9al \u2013 H3C 3J7, Canada","institution_ids":["https://openalex.org/I70931966"]},{"raw_affiliation_string":"DIRO Universit\u00e9 de Montr\u00e9al, Canada#TAB#","institution_ids":["https://openalex.org/I70931966"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5026864910"],"corresponding_institution_ids":["https://openalex.org/I70931966"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.1921,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.8760849,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"27","last_page":"39"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6687685251235962},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.6375979781150818},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5693745613098145},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.5269599556922913},{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.5179354548454285},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4506131708621979},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.4212541878223419},{"id":"https://openalex.org/keywords/search-algorithm","display_name":"Search algorithm","score":0.4169614911079407},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3838312029838562},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.368177592754364},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.34080541133880615},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2703632116317749},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2336677610874176},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22898316383361816},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17982295155525208}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6687685251235962},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.6375979781150818},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5693745613098145},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.5269599556922913},{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.5179354548454285},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4506131708621979},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.4212541878223419},{"id":"https://openalex.org/C125583679","wikidata":"https://www.wikidata.org/wiki/Q755673","display_name":"Search algorithm","level":2,"score":0.4169614911079407},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3838312029838562},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.368177592754364},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.34080541133880615},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2703632116317749},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2336677610874176},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22898316383361816},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17982295155525208},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/978-3-540-73545-8_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-73545-8_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.75.588","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.75.588","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.lifl.fr/~giraud/publis/dgem-cocoon-07-lncs.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.94.5680","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.94.5680","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.iro.umontreal.ca/~mabrouk/Publications/cocoon127a.pdf","raw_type":"text"},{"id":"pmh:oai:HAL:inria-00271642v1","is_oa":true,"landing_page_url":"https://inria.hal.science/inria-00271642","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"13th Annual International Computing and Combinatorics Conference (COCOON 2007), Jul 2007, Banff, Canada. pp.27-39, &#x27E8;10.1007/978-3-540-73545-8_6&#x27E9;","raw_type":"Conference papers"}],"best_oa_location":{"id":"pmh:oai:HAL:inria-00271642v1","is_oa":true,"landing_page_url":"https://inria.hal.science/inria-00271642","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"13th Annual International Computing and Combinatorics Conference (COCOON 2007), Jul 2007, Banff, Canada. pp.27-39, &#x27E8;10.1007/978-3-540-73545-8_6&#x27E9;","raw_type":"Conference papers"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities","score":0.8100000023841858}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1573304998","https://openalex.org/W1950410402","https://openalex.org/W1955121107","https://openalex.org/W1970645589","https://openalex.org/W1996053875","https://openalex.org/W1996836481","https://openalex.org/W2055043387","https://openalex.org/W2062372788","https://openalex.org/W2073321994","https://openalex.org/W2075341611","https://openalex.org/W2088938573","https://openalex.org/W2105070391","https://openalex.org/W2128591967","https://openalex.org/W2131459159","https://openalex.org/W2131989567","https://openalex.org/W2138452362"],"related_works":["https://openalex.org/W2280422768","https://openalex.org/W3143197806","https://openalex.org/W4252555497","https://openalex.org/W3121175838","https://openalex.org/W3016293053","https://openalex.org/W2401723157","https://openalex.org/W2952904874","https://openalex.org/W4297690216","https://openalex.org/W1690653314","https://openalex.org/W4235409866"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
