{"id":"https://openalex.org/W1598932294","doi":"https://doi.org/10.1007/978-3-540-73433-8_23","title":"Inference of Protein-Protein Interactions by Using Co-evolutionary Information","display_name":"Inference of Protein-Protein Interactions by Using Co-evolutionary Information","publication_year":2007,"publication_date":"2007-08-11","ids":{"openalex":"https://openalex.org/W1598932294","doi":"https://doi.org/10.1007/978-3-540-73433-8_23","mag":"1598932294"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-73433-8_23","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-73433-8_23","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035680893","display_name":"Tetsuya Sato","orcid":"https://orcid.org/0000-0002-5518-7824"},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Tetsuya Sato","raw_affiliation_strings":["Division of Bioinformatics, Medical Institute of Bioregulation, Kyushu University, 3-1-1, Maidashi, Higashi-ku, Fukuoka 812-8582, Japan","Medical Institute of Bioregulation, Kyushu University, Higashi-ku, Fukuoka, Japan#TAB#"],"affiliations":[{"raw_affiliation_string":"Division of Bioinformatics, Medical Institute of Bioregulation, Kyushu University, 3-1-1, Maidashi, Higashi-ku, Fukuoka 812-8582, Japan","institution_ids":["https://openalex.org/I135598925"]},{"raw_affiliation_string":"Medical Institute of Bioregulation, Kyushu University, Higashi-ku, Fukuoka, Japan#TAB#","institution_ids":["https://openalex.org/I135598925"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035394108","display_name":"Yoshihiro Yamanishi","orcid":"https://orcid.org/0000-0003-2279-8773"},"institutions":[{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yoshihiro Yamanishi","raw_affiliation_strings":["Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan","Bioinformatics Center Institute for Chemical Research, Kyoto University  Kyoto Japan"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]},{"raw_affiliation_string":"Bioinformatics Center Institute for Chemical Research, Kyoto University  Kyoto Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045840721","display_name":"Katsuhisa Horimoto","orcid":"https://orcid.org/0000-0002-8328-6694"},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Katsuhisa Horimoto","raw_affiliation_strings":["Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology, 2-42 Aomi, Koto-ku, Tokyo, 135-0064, Japan","Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology  Tokyo Japan"],"affiliations":[{"raw_affiliation_string":"Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology, 2-42 Aomi, Koto-ku, Tokyo, 135-0064, Japan","institution_ids":["https://openalex.org/I73613424"]},{"raw_affiliation_string":"Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology  Tokyo Japan","institution_ids":["https://openalex.org/I73613424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058022821","display_name":"Minoru Kanehisa","orcid":"https://orcid.org/0000-0001-6123-540X"},"institutions":[{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Minoru Kanehisa","raw_affiliation_strings":["Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan","Bioinformatics Center Institute for Chemical Research, Kyoto University  Kyoto Japan"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]},{"raw_affiliation_string":"Bioinformatics Center Institute for Chemical Research, Kyoto University  Kyoto Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5106184369","display_name":"Hiroyuki Toh","orcid":null},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hiroyuki Toh","raw_affiliation_strings":["Division of Bioinformatics, Medical Institute of Bioregulation, Kyushu University, 3-1-1, Maidashi, Higashi-ku, Fukuoka 812-8582, Japan","Medical Institute of Bioregulation, Kyushu University, Higashi-ku, Fukuoka, Japan#TAB#"],"affiliations":[{"raw_affiliation_string":"Division of Bioinformatics, Medical Institute of Bioregulation, Kyushu University, 3-1-1, Maidashi, Higashi-ku, Fukuoka 812-8582, Japan","institution_ids":["https://openalex.org/I135598925"]},{"raw_affiliation_string":"Medical Institute of Bioregulation, Kyushu University, Higashi-ku, Fukuoka, Japan#TAB#","institution_ids":["https://openalex.org/I135598925"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5035680893"],"corresponding_institution_ids":["https://openalex.org/I135598925"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12708369,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"322","last_page":"333"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/false-positive-paradox","display_name":"False positive paradox","score":0.8750728368759155},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.775705873966217},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7237293720245361},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5544893145561218},{"id":"https://openalex.org/keywords/projection","display_name":"Projection (relational algebra)","score":0.5475805401802063},{"id":"https://openalex.org/keywords/mutual-information","display_name":"Mutual information","score":0.5354269742965698},{"id":"https://openalex.org/keywords/true-positive-rate","display_name":"True positive rate","score":0.5181930661201477},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4829258620738983},{"id":"https://openalex.org/keywords/false-positives-and-false-negatives","display_name":"False positives and false negatives","score":0.4570993185043335},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42534834146499634},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4228046238422394},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.41465187072753906},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.29627376794815063},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19777393341064453},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.14137768745422363},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.09115546941757202}],"concepts":[{"id":"https://openalex.org/C64869954","wikidata":"https://www.wikidata.org/wiki/Q1859747","display_name":"False positive paradox","level":2,"score":0.8750728368759155},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.775705873966217},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7237293720245361},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5544893145561218},{"id":"https://openalex.org/C57493831","wikidata":"https://www.wikidata.org/wiki/Q3134666","display_name":"Projection (relational algebra)","level":2,"score":0.5475805401802063},{"id":"https://openalex.org/C152139883","wikidata":"https://www.wikidata.org/wiki/Q252973","display_name":"Mutual information","level":2,"score":0.5354269742965698},{"id":"https://openalex.org/C2989486834","wikidata":"https://www.wikidata.org/wiki/Q3808900","display_name":"True positive rate","level":2,"score":0.5181930661201477},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4829258620738983},{"id":"https://openalex.org/C112789634","wikidata":"https://www.wikidata.org/wiki/Q18207010","display_name":"False positives and false negatives","level":3,"score":0.4570993185043335},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42534834146499634},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4228046238422394},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.41465187072753906},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.29627376794815063},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19777393341064453},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.14137768745422363},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.09115546941757202}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-540-73433-8_23","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-73433-8_23","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1963646848","https://openalex.org/W1966378982","https://openalex.org/W1984765576","https://openalex.org/W1990144966","https://openalex.org/W2017519756","https://openalex.org/W2037036397","https://openalex.org/W2037667459","https://openalex.org/W2065304353","https://openalex.org/W2084619201","https://openalex.org/W2102502076","https://openalex.org/W2111582408","https://openalex.org/W2111775329","https://openalex.org/W2112322820","https://openalex.org/W2113654464","https://openalex.org/W2121507105","https://openalex.org/W2130687290","https://openalex.org/W2131531207","https://openalex.org/W2141643929","https://openalex.org/W2147693153","https://openalex.org/W2152568394","https://openalex.org/W2165674132","https://openalex.org/W2167869241","https://openalex.org/W3199943451"],"related_works":["https://openalex.org/W1557094818","https://openalex.org/W3129715955","https://openalex.org/W2183246718","https://openalex.org/W4287692494","https://openalex.org/W2099261052","https://openalex.org/W1973412793","https://openalex.org/W2027184711","https://openalex.org/W4292605373","https://openalex.org/W2951146195","https://openalex.org/W3047594718"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
