{"id":"https://openalex.org/W2139466633","doi":"https://doi.org/10.1007/978-3-540-73255-6_16","title":"Data Integration and Pattern-Finding in Biological Sequence with TESS\u2019s Annotation Grammar and Extraction Language (AnGEL)","display_name":"Data Integration and Pattern-Finding in Biological Sequence with TESS\u2019s Annotation Grammar and Extraction Language (AnGEL)","publication_year":2007,"publication_date":"2007-01-01","ids":{"openalex":"https://openalex.org/W2139466633","doi":"https://doi.org/10.1007/978-3-540-73255-6_16","mag":"2139466633"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-73255-6_16","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-73255-6_16","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015126110","display_name":"Jonathan Schug","orcid":"https://orcid.org/0000-0001-6885-7869"},"institutions":[{"id":"https://openalex.org/I4210147155","display_name":"Pediatrics and Genetics","ror":"https://ror.org/03t432d20","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210147155"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jonathan Schug","raw_affiliation_strings":["Department of Genetics in the School of Medicine,","Department of Genetics in the School of Medicine, University of Pennsylvania, Philadelphia, PA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics in the School of Medicine,","institution_ids":["https://openalex.org/I4210147155"]},{"raw_affiliation_string":"Department of Genetics in the School of Medicine, University of Pennsylvania, Philadelphia, PA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109995507","display_name":"Max Mintz","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Max Mintz","raw_affiliation_strings":["Department of Computer and Information Science in the School of Engineering, University of Pennsylvania, Philadelphia PA, 19104, USA","Department of Computer and Information Science in the School of Engineering, University of Pennsylvania, Philadelphia, PA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science in the School of Engineering, University of Pennsylvania, Philadelphia PA, 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Department of Computer and Information Science in the School of Engineering, University of Pennsylvania, Philadelphia, PA#TAB#","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069334659","display_name":"Christian J. Stoeckert","orcid":"https://orcid.org/0000-0002-5714-991X"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]},{"id":"https://openalex.org/I4210147155","display_name":"Pediatrics and Genetics","ror":"https://ror.org/03t432d20","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210147155"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christian J. Stoeckert","raw_affiliation_strings":["Department of Genetics in the School of Medicine,","Department of Genetics in the School of Medicine, University of Pennsylvania, Philadelphia, PA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics in the School of Medicine,","institution_ids":["https://openalex.org/I4210147155"]},{"raw_affiliation_string":"Department of Genetics in the School of Medicine, University of Pennsylvania, Philadelphia, PA","institution_ids":["https://openalex.org/I79576946"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5015126110"],"corresponding_institution_ids":["https://openalex.org/I4210147155","https://openalex.org/I79576946"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15218699,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"188","last_page":"203"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11879","display_name":"Protist diversity and phylogeny","score":0.9620000123977661,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7261516451835632},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6712591052055359},{"id":"https://openalex.org/keywords/grammar","display_name":"Grammar","score":0.6566735506057739},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.6425965428352356},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.639773428440094},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.45294803380966187},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.43187806010246277},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4299631714820862},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4294660687446594},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.41882503032684326},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.22879061102867126},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.19355669617652893},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.1865352988243103},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1812913715839386},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07420611381530762}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7261516451835632},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6712591052055359},{"id":"https://openalex.org/C26022165","wikidata":"https://www.wikidata.org/wiki/Q8091","display_name":"Grammar","level":2,"score":0.6566735506057739},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.6425965428352356},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.639773428440094},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.45294803380966187},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.43187806010246277},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4299631714820862},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4294660687446594},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.41882503032684326},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.22879061102867126},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.19355669617652893},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.1865352988243103},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1812913715839386},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07420611381530762},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-540-73255-6_16","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-73255-6_16","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.460.2634","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.460.2634","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cbil.upenn.edu/~jschug/Home/Papers/schug-dils07.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","score":0.6800000071525574,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W35967301","https://openalex.org/W1910334622","https://openalex.org/W1932107019","https://openalex.org/W1968766436","https://openalex.org/W1975482179","https://openalex.org/W1980809845","https://openalex.org/W1992396120","https://openalex.org/W1996423252","https://openalex.org/W2038315854","https://openalex.org/W2039775516","https://openalex.org/W2055141743","https://openalex.org/W2056967728","https://openalex.org/W2062872358","https://openalex.org/W2068011423","https://openalex.org/W2068141142","https://openalex.org/W2072666874","https://openalex.org/W2077132193","https://openalex.org/W2077431563","https://openalex.org/W2106848313","https://openalex.org/W2107337820","https://openalex.org/W2107768450","https://openalex.org/W2108871359","https://openalex.org/W2113523470","https://openalex.org/W2117409112","https://openalex.org/W2124871329","https://openalex.org/W2130872776","https://openalex.org/W2134307042","https://openalex.org/W2137910529","https://openalex.org/W2148441137","https://openalex.org/W2150934173","https://openalex.org/W2151831732","https://openalex.org/W2152350018","https://openalex.org/W2153800196","https://openalex.org/W2154514071","https://openalex.org/W2157489888","https://openalex.org/W2163105490","https://openalex.org/W2166187656","https://openalex.org/W2168447817","https://openalex.org/W2171407623","https://openalex.org/W2172186301","https://openalex.org/W2412565619","https://openalex.org/W2519703809","https://openalex.org/W2997317337","https://openalex.org/W4247292500","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2295598435"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
